feat: add exclude flag to extension format and fix

[Malte Janz (MalteJanz)]

What changed?

adds --exclude flag support for extension format and extension fix commands to be more consistent with extension validate (which already supported it)

Why?

Consistency and gives more flexibility, e.g. if you just want to exclude a single tool you don't have to name all others with --only.

How was this tested?

Run these commands with different --only + --exclude flag arguments

Related issue or discussion

Discovered + depends on #1611

Summary by CodeRabbit

Summary

• New Features
  • Added an --exclude option to the extension fix and format commands. Use it with --only to omit specific tools from the selected set.
• Bug Fixes
  • Commands now report an error when an excluded tool is unknown or no tools remain to run.
  • Tool status details distinguish excluded tools from tools not selected with --only. Validation guidance clarifies how to select tools for a run.

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⚙️ Run configuration

Configuration used: Organization UI

Review profile: CHILL

Plan: Advanced

Run ID: a51bb595-6f7a-4aa8-bcd8-aea4d6e5560b

📥 Commits

Reviewing files that changed from the base of the PR and between 8eb46c1 and 8eb46c1.

📒 Files selected for processing (27)

• AGENTS.md
• architecture.md
• cmd/extension/extension_fix.go
• cmd/extension/extension_format.go
• cmd/extension/extension_tool_invocation.go
• cmd/extension/extension_tool_invocation_test.go
• cmd/extension/extension_validate.go
• cmd/extension/extension_validate_selection_test.go
• cmd/project/project_fix.go
• cmd/project/project_format.go
• cmd/project/project_validate.go
• internal/extension/create_test.go
• internal/validation/reporter.go
• internal/validation/reporter_test.go
• internal/verifier/eslint.go
• internal/verifier/phpcsfixer.go
• internal/verifier/phpstan.go
• internal/verifier/prettier.go
• internal/verifier/rector.go
• internal/verifier/storefront_twig.go
• internal/verifier/stylelint.go
• internal/verifier/sw_cli.go
• internal/verifier/symfony_xml.go
• internal/verifier/tool.go
• internal/verifier/tool_test.go
• skills/shopware-cli-extension-store/SKILL.md
• skills/shopware-cli/SKILL.md

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No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info

⚙️ Run configuration

Configuration used: Organization UI

Review profile: CHILL

Plan: Advanced

Run ID: d776e1e3-e280-4dc2-9640-74689ca367ca

📥 Commits

Reviewing files that changed from the base of the PR and between 3d8aba5 and 8eb46c1.

📒 Files selected for processing (4)

• cmd/extension/extension_fix.go
• cmd/extension/extension_format.go
• internal/verifier/extension.go
• internal/verifier/extension_test.go

Included review availability: This review used your included allowance. Your plan provides up to 2 included reviews per hour; 1 remain after this review.

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📝 Walkthrough

Walkthrough

The extension fix and format commands now apply --exclude after --only. Both commands return an error if no tools remain and set up extension tool configuration during execution. Invocation statuses distinguish excluded tools from tools not selected by --only. Validation updates its status reason when --only is unset.

Changes

Extension tool selection

Layer / File(s)	Summary
Extension tool configuration internal/verifier/extension.go, internal/verifier/extension_test.go	SetupExtensionToolConfig initializes tools for the supplied version, then converts the extension to a ToolConfig. A test checks that it uses the configured tool directory.
Fix and format tool selection cmd/extension/extension_fix.go, cmd/extension/extension_format.go	Both commands apply --exclude after --only, return an error when no tools remain, and set up extension tool configuration during execution.
Invocation status reporting cmd/extension/extension_tool_invocation.go, cmd/extension/extension_fix.go, cmd/extension/extension_format.go, cmd/extension/extension_validate.go, cmd/extension/extension_tool_invocation_test.go	Status reporting marks requested tools excluded by --exclude as skipped. Validation uses not selected; use --full or --only when --only is unset. Tests cover statuses, unknown excluded tools, and the new flags.

Priority: ⬇️ Low

Estimated code review effort: 2 (Simple) | ~15 minutes

Change: Feature

Suggested reviewers: moshimorschi

Merge Risk: ⚪ Minimal · up to 8eb46

Fix and format now use the directory established during tool setup. No identified issue remains that should block merging after normal checks.

Security Architecture Review

Security architecture risk: 🔵 Low · up to 8eb46

The commands gain explicit tool exclusions and use the directory selected during setup. One sequencing change can install tool dependencies even when extension configuration is subsequently rejected. No new privilege boundary or verified attack path was established.

Retained concerns

• Low · reliability · inferred: Fix and format can install and cache tool dependencies before rejecting an invalid extension version constraint, weakening failure containment for an unsuccessful invocation.

Security review details

Security Blast Radius

• inferred — The affected authority is the local fix or format process and its tool directory or cache. No new service, tenant, credential, or network trust boundary was established by the inspected call paths.

Trust Boundaries and Controls

• inferred — An extension's compatibility constraint can fail conversion after tool setup, but an extension with a valid constraint could already reach the same installer. The changed ordering does not, by itself, establish a new independently attackable installer.

Resilience and Maintainability Implications

• inferred — Concurrent setup calls could overwrite process-global directory state before conversion reads it. The state was already shared before this PR, and production concurrent command invocation was not established.

Hardening Proposals

• proposed — If concurrent or repeated in-process invocations are supported, pass the selected tool directory per invocation rather than relying on mutable process-global state.

🚥 Pre-merge checks | ✅ 4 | ❌ 1

❌ Failed checks (1 warning)

Check name	Status	Explanation	Resolution
Docstring Coverage	⚠️ Warning	Docstring coverage is 0.00% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 9 functions across 7 files.	Write docstrings for the functions missing them to satisfy the coverage threshold.

✅ Passed checks (4 passed)

Check name	Status	Explanation
Title check	✅ Passed	The title clearly identifies the primary change: adding the exclude flag to the extension format and fix commands.
Description check	✅ Passed	The description includes all required sections and explains the change, motivation, testing approach, and related pull request. The testing section does not report specific results or mention the repo…
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

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[Codecov Comments Bot (codecov-commenter)]

Codecov Report

❌ Patch coverage is 27.02703% with 27 lines in your changes missing coverage. Please review.
⚠️ Please upload report for BASE (main@dce85c2). Learn more about missing BASE report.
⚠️ Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
cmd/extension/extension_fix.go	7.14%	13 Missing ⚠️
cmd/extension/extension_format.go	7.14%	13 Missing ⚠️
internal/verifier/extension.go	66.66%	1 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #1616   +/-   ##
=======================================
  Coverage        ?   65.40%           
=======================================
  Files           ?      480           
  Lines           ?    31722           
  Branches        ?        0           
=======================================
  Hits            ?    20748           
  Misses          ?    10974           
  Partials        ?        0           

Flag	Coverage Δ
go-test	65.40% <27.02%> (?)

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[Lena Forlin (moshimorschi)]

Small thing I noticed while playing with the flags: right now SetupTools runs in PreRunE and the extension gets parsed before we look at --only / --exclude. So if you typo a tool name, you first sit through the tool install and only then get the error.

Would be nicer to check the flags first and set up tools after, like extension validate does. Basically move this block to the top of RunE, call verifier.SetupTools right before the tools run, and drop PreRunE. Same in extension_format.go.

Upside for users: a wrong flag fails instantly instead of a delayed response, and nothing gets installed for a run that wasn't going to happen anyway.

I made a small PR with this suggestion :)
#1624

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Actionable comments posted: 1

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Inline comments:
Review comments at @cmd/extension/extension_fix.go:
- Line 64: After successful verifier.SetupTools calls, refresh
toolCfg.ToolDirectory using verifier.GetToolDirectory() in both
cmd/extension/extension_fix.go at lines 64-64 and
cmd/extension/extension_format.go at lines 58-58; apply this change in each
command before it uses the tool configuration.

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ℹ️ Review info

⚙️ Run configuration

Configuration used: Organization UI

Review profile: CHILL

Plan: Advanced

Run ID: 34be0893-2db4-426a-ab75-fad97dfb7df8

📥 Commits

Reviewing files that changed from the base of the PR and between 1127dc2 and 3d8aba5.

📒 Files selected for processing (2)

• cmd/extension/extension_fix.go
• cmd/extension/extension_format.go

Included review availability: This review used your included allowance. Your plan provides up to 2 included reviews per hour; 1 remain after this review.

[github-actions]

This PR adds a user-facing --exclude flag to extension fix and extension format, so I drafted documentation updates in shopware/docs:

• products/tools/cli/automatic-refactoring.md — documented --exclude for extension fix (options table + usage examples)
• products/tools/cli/formatter.md — added a "Select formatters" section documenting --only/--exclude for extension format

The draft PR is linked from the docs repo and references this PR and Malte Janz (@MalteJanz) as the author. project fix/project format docs were left unchanged since this PR didn't touch those commands.