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speed up the 128-bit ksw2_extd2/extz2 inner loops build #178: Pull request #64 synchronize by nh13
19s nh13:perf/ksw2-extension-kernels
nh13:perf/ksw2-extension-kernels
19s
adds support for bam input, with tag preservation build #177: Pull request #72 opened by bwlang
Action required bwlang:bam_input
bwlang:bam_input
Action required
avoids a segfault when running ASAN, plus auto-clean if switching from asan=1 to no asan. build #176: Pull request #71 opened by bwlang
Action required bwlang:asan_segfault_fix
bwlang:asan_segfault_fix
Action required
adjusts indel CIGAR to better match bwa-meth build #175: Pull request #70 opened by bwlang
Action required bwlang:indel_align_fix
bwlang:indel_align_fix
Action required
exit code was always 0 even on error (#67) build #174: Commit f0e1174 pushed by lh3
40s master
master
40s
r424: sr preset mistakenly sets --adap=yes build #173: Commit baebcef pushed by lh3
21s master
master
21s
r423: report the fraction of out-of-bound pairs build #172: Commit 5c51d49 pushed by lh3
30s master
master
30s
exit code was always 0 even on error build #171: Pull request #67 opened by nh13
32s nh13:fix/exit-status
nh13:fix/exit-status
32s
perf(bwt): prefetch the first backward-extension occ blocks after a k… build #170: Commit c42d875 pushed by lh3
26s master
master
26s
perf(bwt): prefetch the first backward-extension occ blocks after a k-mer lookup build #169: Pull request #65 opened by nh13
25s perf/smem-prefetch-occ
perf/smem-prefetch-occ
25s
speed up the 128-bit ksw2_extd2/extz2 inner loops build #168: Pull request #64 opened by nh13
28s nh13:perf/ksw2-extension-kernels
nh13:perf/ksw2-extension-kernels
28s
-x sr is silently identical to -x adap build #167: Pull request #63 opened by nh13
27s nh13:fix/sr-preset-adap-flag
nh13:fix/sr-preset-adap-flag
27s
r419: revert to the bwa-mem 0x2 behavior build #166: Commit 95a79d4 pushed by lh3
30s master
master
30s
r418: incorrect RNEXT for unmapped mates build #165: Commit 6019322 pushed by lh3
32s master
master
32s
r417: fixed inconsistent 0x2 flag build #164: Commit 54fb387 pushed by lh3
45s master
master
45s
Release minibwa-0.6 (r416) build #163: Commit ebc59ea pushed by lh3
31s master
master
31s
r415: -I was not working build #162: Commit 8ca238f pushed by lh3
1m 20s master
master
1m 20s
Release minibwa-0.5 (r414) build #161: Commit 3065ca8 pushed by lh3
24s master
master
24s
r412: renamed --xa-ratio to --outs build #160: Commit bb39631 pushed by lh3
20s master
master
20s
explain --mmap=lite build #159: Commit e798e94 pushed by lh3
22s master
master
22s
r411: added --xa-ratio and -I; document new opts build #158: Commit 84019dc pushed by lh3
33s master
master
33s
r410: refactored mmap build #157: Commit 0e6367c pushed by lh3
29s master
master
29s
r409: added --mmap=lite mode build #156: Commit f88db46 pushed by lh3
25s master
master
25s
add --mmap option to load the index via mmap() build #155: Commit d46dd7b pushed by lh3
23s master
master
23s
updated snp calling results to r404 build #154: Commit 27b1fef pushed by lh3
28s master
master
28s