All issues

Search results

map -x sr leaves a uniquely-mappable read unmapped when a 3′ soft-clip lets an SMEM cross a contig boundary

enhancementNew feature or requestNew feature or request

Status: Open.

#61 In lh3/minibwa;

· jiangyun-fun opened on Aug 6, 2026

Seeding: batch_size in mb_anchor and pre_len look under-tuned

Status: Open.

#16 In lh3/minibwa;

· nh13 opened on Jun 4, 2026

--meth: emit Bismark-compatible SAM tags

Status: Open.

#14 In lh3/minibwa;

· nh13 opened on May 9, 2026

Problematic alignments

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#6 In lh3/minibwa;

· lh3 opened on May 5, 2026