fungi

A dynamic database of fungal trait measurements

A website for sharing observations of mushrooms.

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.

UFCG: Universal Fungal Core Genes

creating hybrid-gene phylogenetic trees for diversity analyses

Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes

ITS region extraction for long-read amplicon sequencing

Fungal Validation and Identification Pipeline

A spatially explicit trait- and individual-based microbial systems modelling framework

🐟Catalogue of Life toolkit for R

Domingo Fermenter software source code

A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

An R-shiny package to analyse and visualise fungal gene expression data

Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣

A structured controlled vocabulary for the anatomy of fungi

A script to check fungus names for the most up to date nomenclature according to Species Fungorum 🍄

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

GenBank Record downloader for taxonomists

Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi.