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Foldseek enables fast and sensitive comparisons of large structure sets.
C 1.3k 159
Compressing protein structures effectively with torsion angles
C++ 196 25
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
C++ 185 17
Multiple Protein Structure Alignment at Scale with FoldMason
C 282 31
Fast indexing and search of discontinuous motifs in protein structures
Rust 216 26
RNA search
C 52 4
Open source code for AlphaFold.
Analysis script for foldseek interface
An Interactive, Terminal-Native Protein Structure Viewer
Big Fantastic Virus Database (BFVD): Code used for analyses
Regression test for foldseek