[jonas-fuchs]

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respro build QC — charmd

respro build QC

Source: charmd
Status: ⚠️ respro init succeeded with 16 skipped rule(s).
Exit code: 0
Imported single rules: 2660
Imported formula rules: 0
Skipped — reference AA mismatch: 16
Skipped — feature not in GenBank: 0
Skipped — formula member missing: 0

Raw respro init output

[2026-10-02 13:03:59] INFO     respro.db.features — Loaded GenBank data: references +1 (reused 0), features +203 (reused 0)                                     
[2026-10-02 13:04:00] INFO     respro.db.rules_import — Detected 1-based amino acid positions in rules TSV                                                      
                      WARNING  respro.db._rules_features — 16 position(s) with rules have reference AA mismatches and will be skipped:                          
                                 X17403.1 feature 'HCMVUL27' pos 218 (1-based): rule says 'C', feature sequence has 'L' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL54' pos 267 (1-based): rule says 'N', feature sequence has 'G' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL54' pos 271 (1-based): rule says 'D', feature sequence has 'T' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL54' pos 284 (1-based): rule says 'D', feature sequence has 'V' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL54' pos 651 (1-based): rule says 'S', feature sequence has 'Q' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL54' pos 722 (1-based): rule says 'I', feature sequence has 'Y' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL54' pos 954 (1-based): rule says 'R', feature sequence has 'F' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL54' pos 998 (1-based): rule says 'N', feature sequence has 'V' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL54' pos 1129 (1-based): rule says 'P', feature sequence has 'D' — rule will be skipped                 
                                 X17403.1 feature 'HCMVUL54' pos 1156 (1-based): rule says 'L', feature sequence has 'K' — rule will be skipped                 
                                 X17403.1 feature 'HCMVUL54' pos 1162 (1-based): rule says 'S', feature sequence has 'P' — rule will be skipped                 
                                 X17403.1 feature 'HCMVUL56' pos 396 (1-based): rule says 'R', feature sequence has 'E' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL89' pos 663 (1-based): rule says 'A', feature sequence has 'C' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL97' pos 356 (1-based): rule says 'K', feature sequence has 'V' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL97' pos 429 (1-based): rule says 'T', feature sequence has 'I' — rule will be skipped                  
                                 X17403.1 feature 'HCMVUL97' pos 669 (1-based): rule says 'A', feature sequence has 'V' — rule will be skipped                  
                      INFO     respro.db.rules_import — Loaded 2660 single resistance rule(s)                                                                   
                      INFO     respro.cli.init — Project initialized: charmd (/tmp/respro_qc_charmd/charmd.db)                                                  
✓ Project initialised: /tmp/respro_qc_charmd/charmd.db

Failed builds must be fixed before merge.