Search results

Annotation - external - run on cluster

Annotation

Status: Open.

#1665 In SACGF/variantgrid;

· davmlaw opened on Jul 24, 2026

·  

VG4 non-critical

Extract AnalysisNode's arg_q_dict query composition into a node-free helper

Status: Open.

#1664 In SACGF/variantgrid;

· davmlaw opened on Jul 24, 2026

Variants page (all variants) - at least 1 filter

Status: Open.

#1663 In SACGF/variantgrid;

· davmlaw opened on Jul 24, 2026

Integrate MatchMaker Exchange for rare-disease patient matching

Status: Open.

#1662 In SACGF/variantgrid;

· davmlaw opened on Jul 22, 2026

Implement Beacon v2 genomic data-sharing endpoint

Status: Open.

#1661 In SACGF/variantgrid;

· davmlaw opened on Jul 22, 2026

Reclaim mishandles a stalled run's files: deletes a live dump, and reads persisted fields instead of the derivable stem

Annotation

Status: Open.

#1660 In SACGF/variantgrid;

· davmlaw opened on Jul 21, 2026

Better support for risk alleles

Status: Open.

#1659 In SACGF/variantgrid;

· EmmaTudini opened on Jul 20, 2026

Handle workers reclaiming annotation runs

Status: Open.

#1658 In SACGF/variantgrid;

· davmlaw opened on Jul 15, 2026

Speed up SV annotation: move conservation bigWig scoring from VEP to pyBigWig

Status: Open.

#1657 In SACGF/variantgrid;

· davmlaw opened on Jul 14, 2026

Analysis blocked by unfinished SV annotation run: UploadedVCF max-variant / lowest-unannotated are not pipeline-type aware

Status: Open.

#1656 In SACGF/variantgrid;

· davmlaw opened on Jul 14, 2026

Annotation workers - have short and long queues

Annotation

Status: Open.

#1653 In SACGF/variantgrid;

· davmlaw opened on Jul 13, 2026

Annotation dump: single-pass scan (fetch rows + size range lock together) to ~halve dump DB cost

Status: Open.

#1644 In SACGF/variantgrid;

· davmlaw opened on Jul 7, 2026