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Sample Signal by Plate: toggle plate median centring - #53
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ypriverol merged 1 commit intoOct 8, 2026
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Issue #49: the plot showed only the deposited values. Two buttons now switch between the deposited values and plate median centring (each assay's median on each plate moved to its overall median). Centring aligns the plate medians by construction, so the x-axis caption gives the share of PC1 explained by plate in each view as the residual check; the summary table adds the PC1 figure after centring. PC1 explained by plate, deposited -> centred: PAD000009 4% -> 0%, PAD000001 44% -> 1%, PAD000008 32% -> 1%, PAD000021 17% -> 1%, PAD000002 34% -> 10% (residual structure beyond an offset).
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This was referenced Oct 8, 2026
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Closes #49. Stacked on #52: it targets #52's branch, so merge #52 first; GitHub will then retarget this PR to
main.The screenshot in #49 is PAD000009 again: plate medians −0.23 and −0.14.
Change
On real data (PC1 explained by plate)
Tests