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Feature/doc phys - #560

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ywkawai merged 7 commits into
developfrom
feature/doc_phys
Jul 31, 2026
Merged

Feature/doc phys#560
ywkawai merged 7 commits into
developfrom
feature/doc_phys

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@ywkawai

@ywkawai ywkawai commented Jul 31, 2026

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close #552

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🟡 Not ready to approve

There are several concrete documentation issues (typos/grammar and at least one likely equation-moment typo in the radiation derivation) that should be corrected before merging.

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Pull request overview

This PR updates the SCALE-DG documentation to address Issue #552 by adding/expanding descriptions of key physical parameterizations (MYNN level-2 PBL turbulence, simplified radiation schemes, and a slab ocean model), along with supporting references and cross-references.

Changes:

  • Add new documentation chapters for radiation, boundary-layer turbulence (MYNN L2.0), and a slab ocean model.
  • Expand turbulence documentation and improve cross-referencing across the physics description chapters.
  • Add BibTeX entries needed to cite the added/updated documentation.
File summaries
File Description
doc/reference.bib Adds citations used by the new/updated physics documentation sections.
doc/description/turbulence.tex Adds LES/SGS intro text, a subsection label, and a shared “Common formulation” discussion.
doc/description/surface_flux.tex Adds a label for the simple bulk flux subsection so it can be referenced elsewhere.
doc/description/scale_dg_description.tex Integrates the new physics documentation chapters into the main description document.
doc/description/radiation.tex New radiation chapter describing simplified radiative transfer and implemented schemes.
doc/description/pbl_turbulence.tex New PBL turbulence chapter describing MYNN level 2.0 and common diffusion formulation.
doc/description/ocean.tex New slab ocean chapter documenting the single-layer SST prognostic model.
doc/description/dynamics_spatial_discretization.tex Adds a section label for cross-referencing the diffusion/DG discretization discussion.
Review details

Suppressed comments (1)

doc/description/ocean.tex:65

  • This \eqref uses the misspelled label name "eq:goevern_eq_slab_ocean"; it should match the corrected label so references resolve consistently.
Therefore, the governing equation (Eq.\,\eqref{eq:goevern_eq_slab_ocean}) is integrated using the forward Euler method. 
  • Files reviewed: 8/8 changed files
  • Comments generated: 6
  • Review effort level: Lite

We're testing this review assessment. Please use 👍 or 👎 to tell us if it's correct.

Comment thread doc/description/ocean.tex Outdated
Comment thread doc/description/ocean.tex
Comment thread doc/description/radiation.tex Outdated
Comment thread doc/description/pbl_turbulence.tex Outdated
Comment thread doc/description/radiation.tex
Comment thread doc/description/radiation.tex Outdated
@ywkawai
ywkawai merged commit 1aefde4 into develop Jul 31, 2026
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@ywkawai
ywkawai deleted the feature/doc_phys branch August 1, 2026 23:33
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Add brief explanation of MYNN level 2, simplified radiation, ocean slab models to model description

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