Issues

• Feature Proposal: Native Support for 128-Character ASCII / Custom Token Alignment

  yangao07/abPOA#91 · Filter by author hhuili opened on Mar 10, 2026
  1

• abpoa_add_graph_sequence assert(0) on zero-length input → Python process aborts

  yangao07/abPOA#87 · Filter by author Goatofmountain opened on Oct 22, 2025
  1

• Better global alignment when aligning in other direction

  yangao07/abPOA#78 · Filter by author glennhickey opened on Oct 17, 2024
  9

• pyabpoa: segmentation fault with version 1.5.2

  yangao07/abPOA#75 · Filter by author shokrof opened on Aug 13, 2024
  13

• Use seeding from the pyaboa

  yangao07/abPOA#74 · Filter by author shokrof opened on Aug 8, 2024

• Multiple Consensus Sequences Miss Alleles

  yangao07/abPOA#73 · Filter by author Lidweixiang opened on Jul 27, 2024
  4

• abPOA prune graph

  yangao07/abPOA#71 · Filter by author cgroza opened on Jun 24, 2024
  9

• MSA anchoring

  yangao07/abPOA#70 · Filter by author rmhubley opened on May 24, 2024
  4

• optimum parameters for ONT reads

  yangao07/abPOA#68 · Filter by author asylvz opened on Apr 30, 2024
  6

• Remove low coverage bases from consensus sequence?

  yangao07/abPOA#67 · Filter by author jiaan-yu opened on Apr 16, 2024
  7

• Finish-off pushing wheels from CI

  yangao07/abPOA#64 · Filter by author cjw85 opened on Feb 27, 2024

• install make error

  yangao07/abPOA#63 · Filter by author JXAUDZF opened on Feb 21, 2024
  2

• Homopolymer indels not consistently aligned

  yangao07/abPOA#48 · Filter by author rlorigro opened on May 31, 2023
  6

• -S option for pyabpoa

  yangao07/abPOA#47 · Filter by author christopher-vollmers opened on Apr 16, 2023
  2

• Does not accept other characters aside from A, C, T, and G (DNA Sequence)

  yangao07/abPOA#46 · Filter by author kcjavier21 opened on Apr 7, 2023
  2

• abPOA conda installer broken?

  yangao07/abPOA#42 · Filter by author Koen-vdl opened on Mar 20, 2023
  7

• PyPI package does not install

  yangao07/abPOA#41 · Filter by author cjw85 opened on Oct 14, 2022
  14

• abPOA user specifiable seeds

  yangao07/abPOA#37 · Filter by author benedictpaten opened on Mar 24, 2022
  6

• abPOA puts big gap in middle of sequence

  yangao07/abPOA#36 · Filter by author glennhickey opened on Mar 23, 2022
  2

• Align expanded sequences, trim them and then compute the consensus sequence

  yangao07/abPOA#30 · Filter by author AndreaGuarracino opened on Oct 11, 2021
  6

• Consensus coverage in diploid mode

  yangao07/abPOA#29 · Filter by author ldenti opened on Sep 13, 2021
  8

• Incremental update of the graph

  enhancement
  yangao07/abPOA#16 · Filter by author huguesrichard opened on Jan 12, 2021
  13

• Is there any way to reduce memory consumption?

  yangao07/abPOA#14 · Filter by author glennhickey opened on Oct 20, 2020
  24

• [simd_abpoa_align_sequence_to_subgraph1] Error in cg_backtrack. (4)

  yangao07/abPOA#9 · Filter by author ekg opened on Oct 6, 2020
  17

• GFA output

  yangao07/abPOA#2 · Filter by author ekg opened on Sep 19, 2020
  15