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populationRanges function to obtain reciprocal overlap doesn't work as expected

Status: Open.

#47 In waldronlab/CNVRanger;

· stacyhung opened on Jan 23, 2025

how to use this with gistic output?

Status: Open.

#46 In waldronlab/CNVRanger;

· complexgenome opened on Aug 8, 2024

Errors with populationRanges(grl, density=0.1, est.recur=TRUE) and cnvOncoPrint(grl, cgenes)

Status: Open.

#45 In waldronlab/CNVRanger;

· FL512 opened on Mar 22, 2024

cnvEQTL error in .getStates(), no CNV region satisfying min.samples threshold

Status: Open.

#43 In waldronlab/CNVRanger;

· renatoliguori88 opened on Oct 27, 2023

Co-variables in association analyses

Status: Open.

#42 In waldronlab/CNVRanger;

· zhenhua-zhang opened on Sep 20, 2023

error for cnvEQTL

Status: Open.

#41 In waldronlab/CNVRanger;

· dtx282000 opened on Aug 12, 2023

populationRanges: multiple problems while I try to build on section "Identifying recurrent regions" of your vignette

Status: Open.

#39 In waldronlab/CNVRanger;

· DaniilSarkisyan opened on May 12, 2023

how to add Covariate data in CNVeqtl or CNVgwas

Status: Open.

#38 In waldronlab/CNVRanger;

· Kieran-wu opened on Mar 8, 2023

Error with function cnvOncoPrint using a colorectal cancer dataset of 34 WES samples

Status: Open.

#34 In waldronlab/CNVRanger;

· Jasonmbg opened on Oct 27, 2021

cnvGWAS migration

Status: Open.

#27 In waldronlab/CNVRanger;

· lgeistlinger opened on Apr 29, 2021

cnvEQTL: test for linearity / correlation

enhancement

Status: Open.

#23 In waldronlab/CNVRanger;

· lgeistlinger opened on Sep 10, 2020

Problem with cnvGWAS

Status: Open.

#21 In waldronlab/CNVRanger;

· ItahisaMR opened on Jun 4, 2020