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Document alignment and dependency compatibility - #26

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tschuelia merged 1 commit into
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Sep 16, 2026
Merged

tschuelia merged 1 commit into
masterfrom
docs/release-issue-closeout

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@tschuelia

@tschuelia tschuelia commented Sep 16, 2026 •

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Summary

  • document that mixed DNA and amino-acid alignments are unsupported and cannot be combined into one difficulty score
  • explain why predictor scores from different PyPythia versions are not directly comparable
  • clarify the supported Python range and the tested RAxML-NG 1.2.2 plus NumPy 2 environment
  • add Conda channel guidance for avoiding dependency conflicts

Closes #19
Closes #22
Closes #23

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