A React component to sketch / search for network motifs.

Finding Network Motifs Using MCMC Sampling

Discovering Leitmotifs in Multidimensional Time Series

Example implementation of "Mueen's Algorithm for Similarity Search" (aka MASS) for ESP32

Gibby is a Python package designed to find the motif of a transcription factor de novo based on ChIP-seq data.

Automatic Motif Detection wrapper for dotmotif

Motif Finding using Gibbs Sampler

Scans TF binding sites based on motifs.

Motif Finding through Gibbs Sampling

R script for finding and scoring motifs in small genomes using position-frequency tables

Coding problems from course 1 of the Bioinformatics specialization

Bioinformatics- High-throughput data Analysis project

DNA sequence analysis toolkit with GUI and CLI.

Intro to Bioinformatics course contents

A robust Python-based bioinformatics tool for comprehensive DNA sequence analysis and manipulation.

Perl script to find sequences on multi fasta files that match a determined protein motif. The motifs are coded as a regular expression RegEx. Originally designed to search for fungal chitin synthase proteins.

Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.

Finding motifs in proteins by uniprot accession number

A simple Python tool for finding all 1-based positions of a motif in a DNA sequence. Part of my bioinformatics learning roadmap (DNA strings, file I/O, clean Python functions).