Human survival post-LGM relied on adaptation, cooperation, and innovation. Neanderthal and Denisovan genes shaped immunity and metabolism, but uniform modern diets clash with these traits, fueling chronic disease. Embracing diversity can drive health and resilience.

An ontology for ocular immune-mediated inflammatory diseases

Code and data for the manuscript "Transcriptomic clustering of critically ill COVID-19 patients"

A Python package for calculating the Dietary Inflammatory Index (DII) from nutrient intake data

RNA-seq analysis of fibrosis and inflammation signatures in focal segmental glomerulosclerosis (FSGS)

Symptom-level analysis of inflammatory biomarkers and depression in NHANES (n=1,689): weighted logistic regression, k-means clustering, and ML classification testing which PHQ-9 symptoms show the strongest associations with hsCRP, WBC, NLR, albumin, and ferritin.

Search PubMed for Gene associations with Atherosclerosis

Computational target discovery + antigen-specific therapeutic design for inflammatory/immune disorders (EGIDs, celiac, IBD, autoimmune). Bundles the omics-mining, pMHC-epitope, and systematic-review methodology with DOI-verification and presentation-

Analysis in the paper Mitra et.al. PNAS 2017.

Combined Ontology for Inflammatory Diseases

Chronic Pyelonephritis - Kronik Piyelonefrit

Ischemic Gangrenous Cholecystitis - İskemik Gangrenöz Kolesistit

Transcriptomic profiling of blood and brain metastasis samples for cell-type-specific analysis and precision medicine.

Metabolism of serum neurotransmitter precursors after COVID-19

scRNA-seq datasets to support Jung et al, Sci Adv, 7(6): eabe5735, 2021. DOI: 10.1126/sciadv.abe5735

Code for Jonsson*, Zhang*, et al, TteK (Granzyme K+ CD8 T cells), Science Translational Medicine, 2022: the core population of inflamed human tissue-associated CD8 T cells.

This repository contains the code used for the data modeling and analysis presented in Kalb, Vo et al. Scientific Reports 11, 2021.

Chorioamnionitis - Korioamniyonit

Scripts for the research paper "Unveiling CNS Cell Morphology with Deep Learning: A Gateway to Anti-Inflammatory Compound Screening"

PatientINF embedding models - with forum extraction and model building scripts