Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
-
Updated
Jul 10, 2026 - Python
#
ensembl-vep
Here are 8 public repositories matching this topic...
Clinical VCF variant annotation platform integrating Ensembl VEP, ClinVar, 3D PDB structural mapping, pharmacogenomics (PGx), and precision oncology clinical trials.
bioinformatics genomics vcf clinvar pharmacogenomics variant-annotation precision-oncology ensembl-vep
-
Updated
Aug 8, 2026
A lightweight toolkit to inspect, validate, and manage plugin data for Ensembl Variant Effect Predictor (VEP).
-
Updated
May 29, 2025 - Shell
A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.
haskell parsing composable vcf-converter variant-call-format variant-effect-prediction ensembl-vep unix-tool
-
Updated
Sep 23, 2020 - Haskell
VEP environments containerized for singularity
-
Updated
Aug 23, 2018 - Shell
Terminal-based AI assistant for interpreting genetic variants, combining Ensembl VEP, ClinVar, and MCP tool-calling to turn variant identifiers into readable clinical and biological annotations.
python bioinformatics genomics clinvar variant-annotation hgvs ensembl-vep llm rich-cli openrouter model-context-protocol
-
Updated
Jul 10, 2026 - Python
This repo contains the code to dockerize a ensembl REST server on your own local machine. It allows the user to specify a different configuration to a locally hosted ensembl database and tweeking of the throtelling settings setup by default by ensembl for their own servers
-
Updated
May 12, 2023 - Dockerfile
Repository of codes to annotate loss-of-function (LoF) variants, and identify LoF carriers in the UK Biobank
-
Updated
Aug 28, 2026 - Jupyter Notebook
Add this topic to your repo
To associate your repository with the ensembl-vep topic, visit your repo's landing page and select "manage topics."