biomedical-informatics

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

MNE-CPP: The C++ framework for real-time functional brain imaging.

Python wraper for MetaMap

Alaska Project Ideas, mentored by the researchers and collaborators of University of Alaska and supported by open-source entities and enthusiasts in Alaska.

Ontology for consent codes and data use requirements

An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL…

Few- and Zero-shot Multi-Label Learning for Structured Label Spaces

A Scalable Deep Learning Framework for Wave-Based Inverse Problems

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Computational Analysis of Novel Drug Opportunities

Package for biomedical data model and metadata ingress management

BioMedICUS: A biomedical and clinical NLP engine.

Few- and Zero-shot Multi-Label Learning for Structured Label Spaces

MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)

R package for delineating temporal dataset shifts in Eletronic Health Records

Temporal Attention Fusion Network with Custom Loss Function for EEG-fNIRS Classification

Data ingest pipeline for OMIM.

CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) within chromosomes.

Website for the JuliaHealth organization (powered by Franklin.jl).

Build project for all CEDAR Java repositories