[jonas-fuchs]

• renamed daehne jaki to simplexvirus-db
• added algorithm to who-influenza

[github-actions]

respro build QC — simplexvirus-db

respro build QC

Source: simplexvirus-db
Status: ⚠️ respro init succeeded with 15 skipped rule(s).
Exit code: 0
Imported single rules: 1539
Imported formula rules: 10
Skipped — reference AA mismatch: 14
Skipped — feature not in GenBank: 0
Skipped — formula member missing: 1

Raw respro init output

[2026-10-09 10:06:58] WARNING  respro.io.genbank — Skipping duplicate CDS 'RL2' in 'NC_001798.2' (already loaded; likely present in both copies of an inverted  
                               repeat region).                                                                                                                  
                      WARNING  respro.io.genbank — Skipping duplicate CDS 'RL1' in 'NC_001798.2' (already loaded; likely present in both copies of an inverted  
                               repeat region).                                                                                                                  
                      WARNING  respro.io.genbank — Skipping duplicate CDS 'RS1' in 'NC_001798.2' (already loaded; likely present in both copies of an inverted  
                               repeat region).                                                                                                                  
                      WARNING  respro.io.genbank — Skipping duplicate CDS 'RL2' in 'NC_001806.2' (already loaded; likely present in both copies of an inverted  
                               repeat region).                                                                                                                  
                      WARNING  respro.io.genbank — Skipping duplicate CDS 'RL1' in 'NC_001806.2' (already loaded; likely present in both copies of an inverted  
                               repeat region).                                                                                                                  
                      WARNING  respro.io.genbank — Skipping duplicate CDS 'RS1' in 'NC_001806.2' (already loaded; likely present in both copies of an inverted  
                               repeat region).                                                                                                                  
                      INFO     respro.db.features — Loaded GenBank data: references +2 (reused 0), features +148 (reused 0)                                     
                      INFO     respro.db.rules_import — Detected 1-based amino acid positions in rules TSV                                                      
                      WARNING  respro.db._rules_features — 14 position(s) with rules have reference AA mismatches and will be skipped:                          
                                 NC_001798 feature 'UL23' pos 239 (1-based): rule says 'Y', feature sequence has 'V' — rule will be skipped                     
                                 NC_001798 feature 'UL30' pos 681 (1-based): rule says 'GD', feature sequence has 'DE' — rule will be skipped                   
                                 NC_001798 feature 'UL30' pos 684 (1-based): rule says 'E', feature sequence has 'G' — rule will be skipped                     
                                 NC_001798 feature 'UL30' pos 686 (1-based): rule says 'G', feature sequence has 'E' — rule will be skipped                     
                                 NC_001798 feature 'UL30' pos 1112 (1-based): rule says 'A', feature sequence has 'P' — rule will be skipped                    
                                 NC_001806 feature 'UL23' pos 229 (1-based): rule says 'D', feature sequence has 'L' — rule will be skipped                     
                                 NC_001806 feature 'UL23' pos 232 (1-based): rule says 'A', feature sequence has 'L' — rule will be skipped                     
                                 NC_001806 feature 'UL23' pos 299 (1-based): rule says 'P', feature sequence has 'A' — rule will be skipped                     
                                 NC_001806 feature 'UL23' pos 301 (1-based): rule says 'A', feature sequence has 'N' — rule will be skipped                     
                                 NC_001806 feature 'UL23' pos 367 (1-based): rule says 'M', feature sequence has 'T' — rule will be skipped                     
                                 NC_001806 feature 'UL23' pos 369 (1-based): rule says 'V', feature sequence has 'A' — rule will be skipped                     
                                 NC_001806 feature 'UL23' pos 138 (1-based): rule says 'L', feature sequence has 'V' — rule will be skipped                     
                                 NC_001806 feature 'UL30' pos 608 (1-based): rule says 'Y', feature sequence has 'N' — rule will be skipped                     
                                 NC_001806 feature 'UL5' pos 341 (1-based): rule says 'S', feature sequence has 'I' — rule will be skipped                      
[2026-10-09 10:06:59] INFO     respro.db.rules_import — Loaded 1539 single resistance rule(s)                                                                   
                      WARNING  respro.db.rules_import — 1 formula rule(s) skipped — one or more member rules were not imported:                                 
                                 - 'G0006': member(s) not imported: 'UL5_341_I' (reference AA mismatch at NC_001806 UL5 pos 341)                                
                      INFO     respro.db.rules_import — Loaded 10 formula resistance rule(s)                                                                    
                      INFO     respro.cli.init — Project initialized: simplexvirus-db (/tmp/respro_qc_simplexvirus-db/simplexvirus-db.db)                       
✓ Project initialised: /tmp/respro_qc_simplexvirus-db/simplexvirus-db.db

Failed builds must be fixed before merge.

[github-actions]

respro build QC — who-influenza

respro build QC

Source: who-influenza
Status: ✅ respro init succeeded (all rules imported).
Exit code: 0
Imported single rules: 739
Imported formula rules: 169
Skipped — reference AA mismatch: 0
Skipped — feature not in GenBank: 0
Skipped — formula member missing: 0

Raw respro init output

[2026-10-09 10:07:06] INFO     respro.db.features — Loaded GenBank data: references +14 (reused 0), features +16 (reused 0)                                     
                      INFO     respro.db.rules_import — Detected 1-based amino acid positions in rules TSV                                                      
                      INFO     respro.db.rules_import — Loaded 739 single resistance rule(s)                                                                    
                      INFO     respro.db.rules_import — Loaded 169 formula resistance rule(s)                                                                   
                      INFO     respro.cli.init — Project initialized: who-influenza (/tmp/respro_qc_who-influenza/who-influenza.db)                             
✓ Project initialised: /tmp/respro_qc_who-influenza/who-influenza.db

Failed builds must be fixed before merge.