This repository was archived by the owner on Mar 2, 2021. It is now read-only.

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This repository was archived by the owner on Mar 2, 2021. It is now read-only.

Issues

standardized vcf files from Manta and Lumpy can not be indexed with tabix -p vcf *.vcf.gz
talkowski-lab/svtk#100 · opened on Sep 23, 2020
7
svtk bedcluster doesn't cluster events with identical coordinates
talkowski-lab/svtk#99 · opened on Sep 10, 2020
Creating a release/tag?
talkowski-lab/svtk#98 · opened on Apr 29, 2020
2
"no_effect" INFO tag
talkowski-lab/svtk#97 · opened on Nov 11, 2019
standardization not giving proper output
talkowski-lab/svtk#96 · opened on Oct 7, 2019
6
setup.py imports
talkowski-lab/svtk#94 · opened on Aug 26, 2019
No module named 'svtk.baf' error
talkowski-lab/svtk#93 · opened on Aug 26, 2019
vcfcluster for pacbio SV calls?
talkowski-lab/svtk#89 · opened on Apr 5, 2019
Clustering on second chr for translocation doesn't seem to be occurring for svtk resolve
talkowski-lab/svtk#86 · opened on Jan 25, 2019
svtk resolve breaks if unresolved file not specified
talkowski-lab/svtk#85 · opened on Jan 16, 2019
Typo in svtk help text
talkowski-lab/svtk#55 · opened on Apr 5, 2018
Report samples with zero variants in svtk count-svtypes
talkowski-lab/svtk#49 · opened on Mar 20, 2018
POS =0
talkowski-lab/svtk#48 · opened on Mar 16, 2018
vcfcluster reporting LEN=0 for all variants
talkowski-lab/svtk#37 · opened on Dec 11, 2017
Resolve column ordering between vcf2bed and RdTest
talkowski-lab/svtk#36 · opened on Dec 9, 2017
vcfcluster & handling multiple chromosomes
talkowski-lab/svtk#35 · opened on Dec 9, 2017
Internal VCF sort in vcfcluster
talkowski-lab/svtk#34 · opened on Dec 9, 2017
Internal VCF sort during stvk standardize
talkowski-lab/svtk#33 · opened on Dec 8, 2017