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JFM paper#84

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rebeccamccabe merged 265 commits into
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jfm-paper
May 28, 2026
Merged

JFM paper#84
rebeccamccabe merged 265 commits into
mainfrom
jfm-paper

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Y-Bimali and others added 30 commits July 9, 2025 10:38
- Recovered files are all from previously pushed commit.
…imiting cases

- More investigation into low m0 matching MEEM against the package, mismatch is not explained
- cleared top-level of convergence study to helper function scripts
- notebook cleanups in e-region-convergence, region-count-convergence, and neighbor-convergence-effects
- N_k array previously not updating with m0 changes, now it does (in both multi_condensed and helpers.py)
Fix forcing-term callback signature mismatch after I_mk caching refactor
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codecov Bot commented May 28, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 98.38833%. Comparing base (33f02bc) to head (a1ccfa0).

Additional details and impacted files
@@                 Coverage Diff                 @@
##                main         #84         +/-   ##
===================================================
+ Coverage   98.38710%   98.38833%   +0.00123%     
===================================================
  Files             11          11                 
  Lines           1302        1303          +1     
===================================================
+ Hits            1281        1282          +1     
  Misses            21          21                 
Flag Coverage Δ
unit 98.38833% <100.00000%> (+0.00123%) ⬆️

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this is a high-level review focusing on updates to repo structure only, I did not read in depth into any code changes or review details of notebooks. I stopped commenting on the pkl files eventually but comments apply to all pkls.

Comment thread analysis/make_fig.py Outdated
Comment thread dev/python/slants/a-matrix-b-vector-changes/data/ps6.pkl Outdated
Comment thread dev/python/slants/behavior-with-basic-meem/data/ps2.pkl Outdated
Comment thread dev/python/slants/correcting-through-hydros/data/m3.pkl Outdated
Comment thread dev/python/slants/potential-visualizer/data/capytaine-point-values.pkl Outdated
Comment thread pubs/src/meem-appendix.tex Outdated
Comment thread .gitattributes Outdated
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why delete?

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Was deleted in 568ad99 by @Y-Bimali. I will restore with eof=lf which I've used to successfully normalize line endings in MDOcean, unless Bimali there is a reason not to based on why you originally deleted it.

Comment thread .gitmodules
[submodule "src/sea-lab-utils"]
path = src/sea-lab-utils
url = https://github.com/symbiotic-engineering/sea-lab-utils.git
[submodule "sea-lab-utils"]
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duplication not ideal but ok for now

Comment thread pyproject.toml
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this was a calkit environment change I think, I forget if it ended up actually being necessary?

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why are these deleted vs others were renamed?

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All nontechnical (non-.ipynb and non-.py) changes read and approved. Merging now for journal submission, can follow up with a technical code review later.

@rebeccamccabe rebeccamccabe merged commit dfa1a32 into main May 28, 2026
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4 participants