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Release v2.1.0 - #220

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KasperThystrup merged 189 commits into
mainfrom
dev
Aug 17, 2026
Merged

Release v2.1.0#220
KasperThystrup merged 189 commits into
mainfrom
dev

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@KasperThystrup

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Added serovar detector

SimoneScrima and others added 30 commits June 9, 2026 11:48
Fix typo in vancomycin operon URL
Add installation tests workflow for MMASeq
Add versioning functionality and GitHub Actions workflows
Implement dynamic versioning and update version file path
Update version label check to exclude 'major' label
Add GitHub Action for auto version labeling
… label checking

Resolves issue where synchronize events weren't getting accurate label info from the webhook payload. Now fetches current PR state directly from GitHub API to ensure labels are always accurately checked.
KasperThystrup and others added 24 commits August 13, 2026 14:47
! evokes issues on github if at the very start of the expression
* Update workflow to use bioconda::self for building enviornment

Replaced conda installation commands with micromamba for mmaseq.

* Add check-ready job to GitHub Actions in comments.yml and moved buil djob from validate.yml

build job can be initated by writing /check 

* Renamed workflow from 'Label PR by Comment' to 'Commands'
Added a step to check for 'build' label in PRs.
Added a pull request template to guide contributors in providing necessary information and following checklist items.
Removed conditional checks for 'build' label in several steps and added cleanup step for mmaseq.
* Enhanced pull request template checklist with instructions and further detail
Added import for os module to bump_version.py
Added a check for 'build' label to skip test pipeline.
Using Solo mode, to ensure only a single sample is analysed
Using solo mode rather than batch mode
Added serovar detector
@KasperThystrup KasperThystrup added patch Automatic versioning label: v?.?.X Used for bug fixing and typos etc. and removed patch Automatic versioning label: v?.?.X Used for bug fixing and typos etc. labels Aug 17, 2026
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/minor

@github-actions github-actions Bot added the minor Automatic verisoning label: v?.X.? Used for new features. label Aug 17, 2026
@KasperThystrup
KasperThystrup merged commit c02c475 into main Aug 17, 2026
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3 participants