Issues

• The resulting bam file has improper sample name

  pughlab/ConsensusCruncher#24 · Filter by author gavin-peng opened on Nov 23, 2023

• IndexError: string index out of range

  pughlab/ConsensusCruncher#21 · Filter by author robinycfang opened on Dec 12, 2021

• barcode overlap checking needs to limit overlap from start

  pughlab/ConsensusCruncher#16 · Filter by author jinfengzou-uhn opened on Feb 28, 2020

• name 'overlap' is not defined in extract_barcodes.py

  pughlab/ConsensusCruncher#15 · Filter by author jinfengzou-uhn opened on Feb 14, 2020
  3

• Add picard command in the ConsensusCruncher.py

  pughlab/ConsensusCruncher#13 · Filter by author arnavaz opened on Jan 15, 2020

• Bam header RG conflict

  pughlab/ConsensusCruncher#12 · Filter by author arnavaz opened on Jan 15, 2020

• The results output is confusing.

  pughlab/ConsensusCruncher#10 · Filter by author AdaZED opened on Dec 19, 2019

• Overlapping barcodes are not clearly well-defined.

  pughlab/ConsensusCruncher#9 · Filter by author AdaZED opened on Dec 19, 2019

• Import modules instead of shelling out to them

  pughlab/ConsensusCruncher#8 · Filter by author callunity opened on Dec 18, 2019

• Allow this library to be installed via pip

  pughlab/ConsensusCruncher#7 · Filter by author callunity opened on Dec 18, 2019

• Clarify link between genome and bedfile

  pughlab/ConsensusCruncher#6 · Filter by author callunity opened on Dec 18, 2019

• Prefer os.subprocess.call() to os.system()

  pughlab/ConsensusCruncher#5 · Filter by author callunity opened on Dec 18, 2019