paper: JOSS prep — ORCIDs, refs, acknowledgements, affiliations - #28
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- Fill in ORCIDs for Chase, Atul, and Sasha; add Atul's extra affiliations (Convergence Institute, EE, DSAI Institute) per PR #24 - Add NIH (R01CA138264, U01CA212007), NSF (2527296) grant numbers to acknowledgements - Cite Sove2020 and Wang2025 in the QSP intro per Sasha's edits - Cite Gong2021 and RuizMartinez2022 as the spQSP framework lineage that qsp-codegen extracts from - Drop "stiff" qualifier from the MATLAB-integrator critique - Bump date to 18 May 2026 - .gitignore: ignore generated paper artifacts and uv.lock Placeholder commented-out author entries for Chang Gong and Alvaro Ruiz-Martinez left in YAML pending Sasha's reply on coauthor invitations.
…ff ORCIDs Decision: Gong and Ruiz-Martinez are not coauthors (kept as Gong2021/ RuizMartinez2022 lineage citations). Fill remaining ORCIDs in CITATION.cff for Chase, Atul, and Sasha.
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Summary
JOSS submission prep, consolidating Sasha's emailed edits, Atul's PR #24, and a few cleanups.
0000-0003-2395-4408), Atul (0000-0001-5144-6924), Sasha (0000-0002-6706-9235)Sove2020,Wang2025(cited in QSP intro), andGong2021,RuizMartinez2022(cited as the spQSP framework lineage that qsp-codegen extracts from).gitignore: ignore generated paper artifacts (*.html,*.pdf,paper_files/) anduv.lockHolding the merge — pending Sasha's reply on whether Chang Gong / Alvaro Ruiz-Martinez should be invited as coauthors (placeholder YAML comments left in
paper/paper.md). Once resolved, this PR also makes #24 redundant.All
paper.bibentries pass the reference validator against Crossref except for benign diacritic/double-barreled-surname normalizations and the Wang2025 online-first-year vs print-year discrepancy.