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- Status: Open.#37 In plasslab/SCALPEL;
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bugSomething isn't workingSomething isn't workingcan't reproduceThere is not enough information to reproduce this locally.There is not enough information to reproduce this locally.Status: Open.Pipeline crash in compute_prob.R when transcriptomic_distance is positive (10x 3' data)
enhancementNew feature or requestNew feature or requestStatus: Open.#34 In plasslab/SCALPEL;stuck on salmon quant step
questionFurther information is requestedFurther information is requestedStatus: Open.#33 In plasslab/SCALPEL;Format of --clusters file
questionFurther information is requestedFurther information is requestedStatus: Open.#32 In plasslab/SCALPEL;adding new samples
enhancementNew feature or requestNew feature or requestStatus: Open.#31 In plasslab/SCALPEL;Issue Reading 10X GEX+ATAC Multiome Data
documentationImprovements or additions to documentationImprovements or additions to documentationenhancementNew feature or requestNew feature or requestStatus: Open.#30 In plasslab/SCALPEL;Unclear how to specify BAM files in sample sheet
documentationImprovements or additions to documentationImprovements or additions to documentationenhancementNew feature or requestNew feature or requestquestionFurther information is requestedFurther information is requestedStatus: Open.#29 In plasslab/SCALPEL;The step for DGE and differential isoform usage is interrupted.
bugSomething isn't workingSomething isn't workingcan't reproduceThere is not enough information to reproduce this locally.There is not enough information to reproduce this locally.Status: Open.#28 In plasslab/SCALPEL;Execution stops after skipping key processing steps
bugSomething isn't workingSomething isn't workingcan't reproduceThere is not enough information to reproduce this locally.There is not enough information to reproduce this locally.Status: Open.#26 In plasslab/SCALPEL;Better document that
*_ipriming_sites.bed.tar.gzcontains the same data as*.polyA.trackdocumentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#25 In plasslab/SCALPEL;Solution for the problem of the10x Chromium 3' scRNA-seq data stuck in the "salmon_bulk_quantification" step
questionFurther information is requestedFurther information is requestedstaleThis is waiting for a response for a long time and it is not clear if it even is still relevant.This is waiting for a response for a long time and it is not clear if it even is still relevant.Status: Open.#23 In plasslab/SCALPEL;