All pull requests

Pull requests

• Fix building with recent CMake

  #513·arrowd opened Sep 8, 2026·

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• fix build errors with sz_link and missing hdf5

  #506·daeho-ro opened Feb 28, 2026·

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• minor efficiency improvements and code cleanup

  #501·svdrecbd opened Jan 30, 2026·

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• Add competitive --bam and --cram CLI options, CRAM output with reference, fallback to BAM if reference missing, update help, enable BAM/CRAM by default

  #499·BenjaminDEMAILLE opened Oct 27, 2025·

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• Revert "Update batch processing length normalization to match non-batch processing length normalization"

  #442·Yenaled opened May 16, 2024Collaborator·

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• Automatically run tests once a week and for commits to src/** and test/**

  #388·lauraluebbert opened Jun 30, 2023Member·

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• Add support for the SPLiTSeq technology

  #278·mkabza opened Aug 23, 2020·

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• Provide optional strand-specificity flags for kallisto bus

  #265·mfansler opened Jun 1, 2020·

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• pass user-defined bias argument to bootstrap estimations

  #260·pveber opened Apr 26, 2020·

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• GitHub actions for automatic builds

  #247·Lioscro opened Jan 24, 2020·

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• Need to run autoconf/autoheader

  #172·hyphaltip opened May 17, 2018·

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• Update match function

  #166·mr-eyes opened Mar 4, 2018·

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• Can separate based on species/contamination

  #152·myrefoli opened Dec 14, 2017·

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• Remove -u as short option for --umi.

  #114·roryk opened Jul 2, 2016·

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