Repositories list

• chat_HIVDB_paper

  Public
  Python

  •00 forks•00 stars•00 issues•11 pull request•Updated Apr 18, 2026Apr 18, 2026

• post-align

  Public
  A post alignment toolkit for refining pairwise/multiple alignment sequences.

  Python

  •11 fork•44 stars•33 issues•11 pull request•Updated Apr 13, 2026Apr 13, 2026

• hivdb-cms

  Public
  Static CMS data source for hivdb.stanford.edu

  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•33 pull requests•Updated Apr 7, 2026Apr 7, 2026

• genbank_seq_downloader

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• AB1_file_Analysis_Tool

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• sierra

  Public
  HIVDB Genotypic Resistance Interpretation Program

  Java

  •

  GNU General Public License v3.0

  •88 forks•2121 stars•1313 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• icosa

  Public
  The common library used by the websites created by HIVDB team

  JavaScript

  •

  MIT License

  •00 forks•66 stars•11 issue•11 pull request•Updated Mar 16, 2026Mar 16, 2026

• clinviro

  Public
  An open source Laboratory Information Management System for HIV genotypic resistance test for laboratories

  JavaScript

  •

  GNU General Public License v3.0

  •55 forks•88 stars•00 issues•1010 pull requests•Updated Feb 15, 2026Feb 15, 2026

• GenBankRefs

  Public
  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 28, 2026Jan 28, 2026

• sierra-client

  Public
  HIVdb webservice client

  Python

  •

  MIT License

  •55 forks•1212 stars•66 issues•11 pull request•Updated Jan 22, 2026Jan 22, 2026

• hivfacts

  Public
  Structured knowledge base of HIV-1/HIV-2.

  Java

  •

  The Unlicense

  •11 fork•99 stars•11 issue•11 pull request•Updated Jan 18, 2026Jan 18, 2026

• chatpaper

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 3, 2025Dec 3, 2025

• PubMed_metadata_catcher

  Public
  Fetch pub med

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 10, 2025Oct 10, 2025

• hivdb-DTG

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 29, 2025Aug 29, 2025

• codfreq

  Public
  FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2

  hivngs-pipelinesars-cov-2

  hivngs-pipelinesars-cov-2

  Python

  •

  MIT License

  •33 forks•1414 stars•88 issues•22 pull requests•Updated Aug 12, 2025Aug 12, 2025

• sierra-graphql

  Public
  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 26, 2025Jul 26, 2025

• sierra-core

  Public
  Core code of Sierra Project.

  Java

  •

  GNU General Public License v3.0

  •11 fork•11 star•33 issues•11 pull request•Updated Jul 26, 2025Jul 26, 2025

• Envelope

  Public
  gp120, gp41 files and code

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 18, 2025Feb 18, 2025

• chiro-cms

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•22 issues•22 pull requests•Updated Oct 29, 2024Oct 29, 2024

• covid-drdb-payload

  Public
  A relational database of SARS-CoV-2 resistance data.

  covid-19sars-cov-2covid-19-data+ 1

  covid-19sars-cov-2covid-19-datacovid-19-api

  Creative Commons Attribution Share Alike 4.0 International

  •99 forks•88 stars•122122 issues•00 pull requests•Updated Aug 21, 2024Aug 21, 2024

• covid-drdb-reports

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 16, 2024Aug 16, 2024

• genbank_submission_tool

  Public archive
  Python

  •

  The Unlicense

  •22 forks•11 star•00 issues•00 pull requests•Updated Jun 24, 2024Jun 24, 2024

• sgsdb

  Public
  Scripts to generate SGS database

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•66 pull requests•Updated Jun 17, 2024Jun 17, 2024

• sierra-hbv

  Public
  Stanford University Sierra Program for Hepatitis B

  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 26, 2024Mar 26, 2024

• poliopoly

  Public
  Shell

  •

  MIT License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Mar 21, 2024Mar 21, 2024

• HBV-alignment

  Public
  HBV analysis

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 3, 2024Feb 3, 2024

• covid-drdb

  Public
  Python

  •

  MIT License

  •00 forks•22 stars•1111 issues•00 pull requests•Updated Dec 16, 2023Dec 16, 2023

• aapcnt-previewer

  Public
  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•11 issue•00 pull requests•Updated Oct 4, 2023Oct 4, 2023

• polio-mutations

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 28, 2023Sep 28, 2023

• sierra-sars2

  Public
  covid-19sars-cov-2

  covid-19sars-cov-2

  Java

  •

  GNU General Public License v3.0

  •00 forks•33 stars•66 issues•11 pull request•Updated May 23, 2023May 23, 2023