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    35 repositories

    • DiseaseToGene

      Public
      AI-powered Drug Target Discovery
      TypeScript
      •0•0•0•0•Updated Sep 10, 2026Sep 10, 2026

    • cfde-fall-2026

      Public
      CFDE Fall 2026 Meeting event page — October 13-14, 2026, UC San Diego
      CSS
      •0•0•0•0•Updated Sep 9, 2026Sep 9, 2026

    • sdd-navigator

      Public
      TypeScript
      •0•0•0•0•Updated Sep 7, 2026Sep 7, 2026

    • cfde-connect-website

      Public
      CFDEConnect — public website and community portal for the NIH Common Fund Data Ecosystem
      JavaScript
      •0•0•0•0•Updated Aug 21, 2026Aug 21, 2026

    • sparc-collabofest-2026

      Public
      2026 SPARC Drug Discovery CollaboFest — challenge landing page (static, self-contained)
      HTML
      •0•0•0•0•Updated Aug 7, 2026Aug 7, 2026

    • sdd-auth-guide

      Public
      0•0•0•0•Updated Aug 7, 2026Aug 7, 2026

    • sdd-navigator-prototype

      Public
      Smart Drug Discovery Navigator
      TypeScript
      •0•0•0•0•Updated Jul 22, 2026Jul 22, 2026

    • SPINNER

      Public
      JavaScript
      •
      Other
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • kras-combo-therapy

      Public
      Separable KRAS-combination target nomination in pancreatic cancer: an induced ERBB2/3 adaptive response and a standing FAK dependency (public data, GeneTerrain …
      Python
      •
      Other
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • HPA

      Public
      Python
      •0•0•0•0•Updated Jun 22, 2026Jun 22, 2026

    • GeneTerrain-Web-APP

      Public
      TypeScript
      •0•0•0•0•Updated May 19, 2026May 19, 2026

    • DEMA

      Public
      Java
      •
      MIT License
      •0•1•0•0•Updated May 4, 2026May 4, 2026

    • WIPER

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 4, 2026May 4, 2026

    • WINNER

      Public
      This is the source code for manuscript: Nguyen, T. et al. Gene Prioritization in Network Biology with WINNER. The code rank the most important genes in a gene …
      Python
      •
      Other
      •0•0•0•0•Updated May 4, 2026May 4, 2026

    • SEAS

      Public
      Statistical Enrichment Analysis of Samples (SEAS): a general-purpose tool to annotate metadata neighborhoods of biological samples
      HTML
      •
      MIT License
      •1•0•0•0•Updated Apr 25, 2026Apr 25, 2026

    • mondrian-web

      Public
      JavaScript
      •1•1•0•0•Updated Apr 22, 2026Apr 22, 2026

    • sdd-wiki-comments

      Public
      Giscus comments backend for wiki.smartdrugdiscovery.org — discussions live here, wiki content lives in aimed-lab/sdd-wiki.
      0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • smartdrugdiscovery

      Public
      TypeScript
      •0•0•2•0•Updated Apr 8, 2026Apr 8, 2026

    • MLPA_paper

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Mar 21, 2026Mar 21, 2026

    • SUD-PROMISE

      Public
      SUD-PROMISE Drug Repositioning Assessment Platform
      Python
      •0•0•0•0•Updated Jan 27, 2026Jan 27, 2026

    • MLPA_abstract

      Public
      Source code for abstract: "MLPA: A Framework Modeling for Non-Small Cell Lung Cancer Survival Prediction"
      Jupyter Notebook
      •0•1•0•0•Updated Jan 15, 2026Jan 15, 2026

    • biodata-management

      Public
      This repository contains materials, case studies, and project overview discussed during INFO 703/603 course by Dr. Jake Chen at UAB
      bioinformaticsinformaticsseas
      bioinformaticsinformaticsseasbiomedical-data-scienceaimed-lab
      MIT License
      •0•1•0•0•Updated Dec 30, 2025Dec 30, 2025

    • MLPA_demo

      Public
      Python
      •0•1•0•0•Updated Dec 29, 2025Dec 29, 2025

    • KinoViz

      Public
      KinoViz: A User-Friendly Web Application for High-Throughput Kinome Profiling Analysis and Visualization in Cancer Research
      R
      •0•0•0•0•Updated Sep 20, 2025Sep 20, 2025

    • CM4AI

      Public
      Extension of CM4AI
      Jupyter Notebook
      •0•1•0•0•Updated Sep 17, 2025Sep 17, 2025

    • LlamaAffinity

      Public
      Antibody binding affinity prediction model.
      Jupyter Notebook
      •0•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • mondrian-map

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • info-703-2025

      Public
      Python
      •2•0•1•0•Updated May 8, 2025May 8, 2025

    • Temporal_GeneTerrain

      Public template
      Jupyter Notebook
      •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • Polar-Gini-Curve

      Public
      This is the source code for manucript Nguyen, T.M., Jeevan, J.J., Xu, N. and Chen, J.Y., 2021. Polar Gini Curve: a technique to discover gene expression spatial…
      MATLAB
      •1•2•0•0•Updated Jul 12, 2023Jul 12, 2023
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