AOIPLab repositories

20 repositories

ORA
Public
OCT Reflectivity Analytics
analytics brandon reflectivity
analytics brandon reflectivity ora oct wilk
Java
•2•0•0•0•Updated Aug 3, 2026Aug 3, 2026
Metricks
Public
A repository containing validated coordinate structure measurements. All of these metrics are designed for adaptive optics ophthalmoscope images.
map metrics density
map metrics density subtraction average ao cdc pcd cones aoslo
MATLAB
•
GNU General Public License v3.0
•6•2•0•0•Updated Jul 15, 2026Jul 15, 2026
Eye_Motion_Repair
Public
Code that removes residual distortions due to eye motion from images and videos processed via strip or grid registration.
processing script scanner
processing script scanner quad distortion ao removal single aoslo
MATLAB
•
GNU General Public License v3.0
•6•1•0•0•Updated May 14, 2026May 14, 2026
AOAutomontaging
Public
Automontaging for AO images
processing images quad
processing images quad montage ao aoslo montager montaging
HTML
•
Other
•7•1•0•0•Updated Apr 15, 2026Apr 15, 2026
ConeMapper
Public
count mapper cone
count mapper cone cells wolf harmening conemapper
MATLAB
•
GNU General Public License v3.0
•2•0•0•0•Updated Apr 10, 2026Apr 10, 2026
OCT_Thickness_Extractor
Public
Script to extract OCT layer thicknesses based on segmented OCT data.
MATLAB
•0•2•0•0•Updated Jan 29, 2026Jan 29, 2026
Retinal_Thickness_Analysis
Public
MATLAB
•0•0•0•0•Updated Jan 6, 2026Jan 6, 2026
Fixation_GUI
Public
A Fixation Target GUI that uses a secondary monitor as the fixation screen.
Python
•
Apache License 2.0
•3•0•0•0•Updated Sep 11, 2025Sep 11, 2025
B-COSFIRE-MATLAB
Public
MOVED to https://gitlab.com/nicstrisc/B-COSFIRE-MATLAB. Matlab implementation of the B-COSFIRE filters for detection of curvilinear patterns in images
MATLAB
•
BSD 3-Clause "New" or "Revised" License
•2•0•0•0•Updated Jun 19, 2025Jun 19, 2025
ARFS
Public
Input from ARFS to create batch files
processing reference quad
processing reference quad automatic selection frame ao aoslo arfs
MATLAB
•2•1•0•0•Updated Jun 5, 2025Jun 5, 2025
File_Renaming
Public
Matlab scripts to rename or mask files
grid directory excel
grid directory excel rename file name mask masking renaming
MATLAB
•0•0•0•0•Updated Feb 28, 2025Feb 28, 2025
uWFS
Public
Handheld WFS code. Version Forked from WAIVS repo. Originally from the Jonnal lab (CHOIR).
Python
•3•0•0•0•Updated Nov 12, 2024Nov 12, 2024
Szpernal_etal_OCTA_RetinalVascMetrics
Public
Repository containing all scripts used in "Assessing the Sensitivity of OCT-A Retinal Vasculature Metrics" by Szpernal et al.
MATLAB
•
GNU General Public License v3.0
•0•0•0•0•Updated Oct 22, 2024Oct 22, 2024
OCT_Volume_Viewer
Public
OCT Volume Viewer Application
0•0•0•0•Updated Apr 8, 2024Apr 8, 2024
Matfile_Generator
Public
Creates .mat files to correspond to confocal videos. Used mainly for bin converted avis
quad avi bin
quad avi bin mat converted aoslo matfile confocal arfs
MATLAB
•0•0•0•0•Updated Feb 13, 2024Feb 13, 2024
OCT-Converter
Public
Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
Python
•
MIT License
•85•0•0•0•Updated Nov 9, 2023Nov 9, 2023
Full-Auto-Density-Mapping
Public
A repository that implements a fully automated approach for estimating density, and spacing both in single images and in montages.
MATLAB
•
Apache License 2.0
•1•0•0•0•Updated May 24, 2023May 24, 2023
Circularity_vs_Roundness_FAZ
Public
Repository containing all scripts used in "The Shape of the Foveal Avascular Zone: When a Circle Isn't Round" by Grieshop et al.
simulation circle round
simulation circle round circularity faz roundness
MATLAB
•0•0•0•0•Updated Mar 2, 2023Mar 2, 2023
ConeSegmentation
Public
A software package for segmenting the boundaries of cone photoreceptors in non-confocal adaptive optics images such as split detection.
cone segmentation ao
cone segmentation ao tam johnny
C++
•
Other
•1•0•0•0•Updated Mar 12, 2022Mar 12, 2022
AO-PIPELINE
Public
Adaptive optics scanning light ophthalmoscope image processing pipeline
processing pipeline pipe
processing pipeline pipe ao aoslo
HTML
•
GNU General Public License v3.0
•2•0•0•0•Updated May 24, 2021May 24, 2021

ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.

Repositories list

20 repositories