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Releases: onecodex/taxonomy

v0.10.5

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@audy audy released this 14 Apr 21:00

What's Changed

  • Add iter to TaxonomyIterator to satisfy Python iterator protocol by @audy in #79
  • Fix remove() corrupting parent indices and leaking data array by @audy in #78

Full Changelog: v0.10.4...v0.10.5

v0.10.4

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@audy audy released this 23 Mar 20:20

What's Changed

  • add TaxonomyNode class to python lib by @audy in #75

Full Changelog: v0.10.3...v0.10.4

v0.10.3

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@audy audy released this 13 Feb 23:55

What's Changed

New Contributors

Full Changelog: v0.10.2...v0.10.3

v0.10.2

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@audy audy released this 15 Jan 23:27

What's Changed

  • Use pytest instead of unittest by @audy in #66
  • Expand JSON format documentation by @audy in #67
  • Add type stub by @audy in #69

Full Changelog: v0.10.1...v0.10.2

v0.10.1

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@audy audy released this 18 Apr 18:30
  • Add support for NCBI (a)cellular root ranks
  • Add no_rank to ranks (as a synonym for no rank). Needed for some versions of the NCBI taxonomy database

v0.7.0

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@audy audy released this 20 Oct 16:17
v0.7.0

v0.4.0: Editing

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@bovee bovee released this 22 Jan 22:19

New features:

- add and remove methods added to GeneralTaxonomy
- add, remove and change methods added to Python API
- weight-related methods added to Python API
- Python iteration faster and takes less memory
- test coverage increased to >90%.

See #16 for more details.

v0.3.1: New Rust-based library

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@bovee bovee released this 30 Apr 20:11

This consolidates our new Rust/Python taxonomy library from taxonomy-rs into the old taxonomy repo.

Pin to networkx < 2.0

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@boydgreenfield boydgreenfield released this 19 Dec 02:44
v0.2.1

Pin to networkx < 2.0. Version v0.2.1

v0.1.0

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@boydgreenfield boydgreenfield released this 26 Jun 05:00

Initial release. Try to specify point releases in requirements.txt files for other modules/projects hereafter.