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Pull requests: nh13/minibwa

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Pull requests list

perf(index): parallelize the SA-to-BWT pipeline with OpenMP feature review vehicle for a manifest feature; never a merge vehicle
#8 opened Jun 25, 2026 by nh13 Owner • Draft
ALT-aware mapping via post-extension liftover groups feature review vehicle for a manifest feature; never a merge vehicle
#7 opened Jun 25, 2026 by nh13 Owner • Draft
reassociate the affine-gap recurrence in ksw2_ll for arm64 feature review vehicle for a manifest feature; never a merge vehicle
#6 opened Jun 25, 2026 by nh13 Owner • Draft
format SAM/PAF records with inline appenders feature review vehicle for a manifest feature; never a merge vehicle
#5 opened Jun 25, 2026 by nh13 Owner • Draft
add a --meth CI test and document two scoring details feature review vehicle for a manifest feature; never a merge vehicle
#4 opened Jun 25, 2026 by nh13 Owner • Draft
feat(align): 5'/3' soft-clip penalty (-L) feature review vehicle for a manifest feature; never a merge vehicle
#3 opened Jun 25, 2026 by nh13 Owner • Draft
4 of 5 tasks
feat(map): expose --max-sub-occ and --min-sub-occ CLI ablation flags feature review vehicle for a manifest feature; never a merge vehicle
#2 opened Jun 25, 2026 by nh13 Owner • Draft
4 of 5 tasks
read FASTQ records with a single copy instead of two feature review vehicle for a manifest feature; never a merge vehicle
#1 opened Jun 25, 2026 by nh13 Owner • Draft
ProTip! Exclude everything labeled bug with -label:bug.