feat: add msisensorpro/baseline module; clarify pro -d dual semantics

[nh13]

Closes #11188, overlaps with #6007 (and closed #6350).

What

1. New module msisensorpro/baseline wrapping msisensor-pro baseline. Builds a trained baseline microsatellite file from a panel of normal samples, for use with msisensor-pro pro -d in tumor-only MSI calling. The configure file consumed by baseline -i is built internally from the staged *_all files so callers can feed a collected channel of msisensorpro/pro outputs directly (rather than hand-writing a configure file that references Nextflow work paths).
2. msisensorpro/pro/meta.yml: expand the -d input description to document both supported modes (raw scan list with hard threshold via -i, vs trained baseline). No behavior change; pro's main.nf already accepts either file type and -i already flows through $args.

Why

msisensor-pro pro -d accepts both a scan list and a baseline file per ProUsage() in cpp/distribution.cpp L199-L206. The wiki Best-Practices documents only the baseline workflow for tumor-only, and the maintainer recommends it in xjtu-omics/msisensor-pro#77. Until now the baseline subcommand had no module, so pipelines couldn't produce a baseline within nf-core/modules and defaulted to the scan-list-with-hard-threshold fallback mode.

TODOs before ready for review

• Verify the live test under -profile docker against real fixture data. The chr21 test fasta may not contain enough microsatellites for baseline to produce a usable output. If so, either locate richer fixtures or drop to stub-only testing and open a follow-up for fixtures.
• nf-core modules test msisensorpro/baseline --profile {docker,singularity,conda}
• Snapshot (tests/main.nf.test.snap) once live test passes
• Migrate msisensorpro/pro's test to chain through the new baseline module so CI exercises mode 2 (recommended mode)
• Maintainer input on whether to rename pro's second input from list to something like microsat_file (would be a breaking doc-only change)

Happy to iterate on any of the above. Specifically wanted to surface the design of the baseline module's input shape (internally-constructed configure file) before doing more work.

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests! (live test present but unverified, see TODOs)
• If you've added a new tool - have you followed the module conventions in the contribution docs
• Follow the naming conventions.
• Follow the parameters requirements.
• Follow the input/output options guidelines.
• Add a resource label
• Use BioConda and BioContainers if possible to fulfil software requirements.
• Broadcast software version numbers to topic: versions
• nf-core modules test <MODULE> --profile docker
• nf-core modules test <MODULE> --profile singularity
• nf-core modules test <MODULE> --profile conda
• Remove all TODO statements. (none in module code; TODOs above are PR-level followups)

[SPPearce]

Linting is complaining, but otherwise looks good

[nh13]

@SPPearce fixed, thanks!

[SPPearce]

All good