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[DOC] Add note explaining why we are using already preprocessed data #67

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michellewang merged 3 commits into from
Nov 5, 2026
Merged

[DOC] Add note explaining why we are using already preprocessed data #67

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8255425
add paragraph explaining why we are using already processed data
michellewang Nov 5, 2026
b31a7b9
minor wording change
michellewang Nov 5, 2026
8804158
wrap in an admonition
michellewang Nov 5, 2026
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5 changes: 5 additions & 0 deletions docs/source/initial_setup.md
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Expand Up @@ -135,6 +135,11 @@ FBM_SECURITY_ALLOW_FEDERATED_ANALYTICS=True

## Data download

```{note}
In the interest of time, we will use open-access imaging data that has already been preprocessed with FreeSurfer.
In the future, we may propose a follow-up experiment where a subset of interested participating nodes process either OpenNeuro raw BIDS data or their own data with FreeSurfer using Nipoppy.
```

Download the OpenNeuro dataset assigned to your site, replacing `<DATASET_ID>` with its ID.
Your dataset ID is the second part of the `FBM_NODE_NAME` variable you just set in your `.env` file, beginning with `ds` (e.g. `ds123456` in the example `.env` file above).

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