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Update tests and default Neurobagel query file to use
bidsinstead ofnidmterms_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged againStatus: Open.#562 In neurobagel/api;Remove
orjsondependencydependenciesDependency updates and their version upgrades.Dependency updates and their version upgrades.flag:scheduleFlag issue that should go on the roadmap or backlog.Flag issue that should go on the roadmap or backlog.Status: Open.#548 In neurobagel/api;Add test runners for Python 3.11-3.13
_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged againquick fixMinimal planning and/or implementation work required.Minimal planning and/or implementation work required.testsEnhancing or fixing tests where functioning is not affected.Enhancing or fixing tests where functioning is not affected.Status: Open.#546 In neurobagel/api;Environment Setup: pandas==1.5.2 fails to install on Python 3.12
_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged againdependenciesDependency updates and their version upgrades.Dependency updates and their version upgrades.Status: Open.#536 In neurobagel/api;Add caching for vocabulary fetching to improve API startup reliability
_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged againStatus: Open.#534 In neurobagel/api;Officially deprecate legacy
GET /queryendpoint forPOST /subjects_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged againdeprecationDeprecation and removal of features that are no longer needed.Deprecation and removal of features that are no longer needed.Status: Open.#520 In neurobagel/api;Switch to 3.9+ type annotations syntax everywhere
_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged againrefactorSimplifying or restructuring existing code or documentation.Simplifying or restructuring existing code or documentation.Status: Open.#518 In neurobagel/api;Revisit what
POST /subjectsresponse should be for a protected/aggregated node_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged againflag:discussFlag issue that needs to be discussed before it can be implemented.Flag issue that needs to be discussed before it can be implemented.Status: Open.#516 In neurobagel/api;Consider standardizing the fields between the instances endpoints
_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged againStatus: Open.#514 In neurobagel/api;Align identifiers in code to current Neurobagel naming conventions
_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged againrefactorSimplifying or restructuring existing code or documentation.Simplifying or restructuring existing code or documentation.Status: Open.#512 In neurobagel/api;Make API version and node info discoverable
usabilityIssue affecting user or developer experience.Issue affecting user or developer experience.Status: Open.#511 In neurobagel/api;Disallow extra parameters or fields in queries
_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged againrefactorSimplifying or restructuring existing code or documentation.Simplifying or restructuring existing code or documentation.Status: Open.#492 In neurobagel/api;