This repository will contain code to reconstruct gene regulatory networks for 38 tissues from the Genotype-Tissue Expression project (GTEx), using RNA-Seq data from GTEx normalized with YARN (http://bioconductor.org/packages/release/bioc/html/yarn.html). These networks are analyzed in "Understanding Tissue-specific Gene Regulation" by Abhijeet R. Sonawane, John Platig, Maud Fagny, Cho-Yi Chen, Joseph N. Paulson, Camila M. Lopes-Ramos, Dawn L. DeMeo, John Quackenbush, Kimberly Glass, Marieke L. Kuijjer, BioRxiv doi: https://doi.org/10.1101/110601.