Update dependencies

[linw1995]

Summary:

• Update PDM-locked development and documentation dependencies.
• Refresh exported requirement files.
• Update pre-commit hook revisions and add pre-commit to the Nix development shell.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.82%. Comparing base (4db3503) to head (2833c5c).

Additional details and impacted files

@@           Coverage Diff           @@
##           master      #64   +/-   ##
=======================================
  Coverage   94.82%   94.82%           
=======================================
  Files           6        6           
  Lines         560      560           
  Branches       66       66           
=======================================
  Hits          531      531           
  Misses         16       16           
  Partials       13       13           

Flag	Coverage Δ
3.10	94.82% <ø> (ø)
3.11	94.82% <ø> (ø)
3.12	94.82% <ø> (ø)
3.13	94.82% <ø> (ø)
3.14	94.82% <ø> (ø)
main	94.82% <ø> (ø)
unittest	94.82% <ø> (ø)

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