Issues

• when colnames(L) get named in case they are NULL with colnames(Y) <- paste0("gene_", letters[seq_len(ncol(Y))]) wouldn't that give gene_NA if there are more than 26 genes?

  kieranrcampbell/clonealign#16 · Filter by author kieranrcampbell opened on Feb 17, 2021

• the inference runs through one ELBO computation and throws an error (below) if rownames(L) and colnames(Y) don't match or are both NULL.

  kieranrcampbell/clonealign#15 · Filter by author kieranrcampbell opened on Feb 17, 2021

• delta-CN and delta-RNA

  kieranrcampbell/clonealign#14 · Filter by author gianasco opened on Mar 24, 2020
  1

• size_factors parameter

  kieranrcampbell/clonealign#13 · Filter by author gianasco opened on Mar 23, 2020
  1

  

• module 'tensorflow' has no attribute 'reset_default_graph'

  kieranrcampbell/clonealign#12 · Filter by author skatragadda-nygc opened on Jan 28, 2020
  4

• Performance with multinomial likelihood

  kieranrcampbell/clonealign#11 · Filter by author pedrofale opened on Sep 10, 2019
  9

• Handle situation when copy number is 0

  kieranrcampbell/clonealign#1 · Filter by author kieranrcampbell opened on Jan 24, 2018