Name		Name	Last commit message	Last commit date
logfiles		logfiles
GenomeAnalysisTK		GenomeAnalysisTK
MarkDuplicates		MarkDuplicates
PicardMerge		PicardMerge
README.md		README.md
RunVarscan		RunVarscan
RunVarscanFilter		RunVarscanFilter
SnpEff		SnpEff
SortSam		SortSam
count_flagstat_exome.py		count_flagstat_exome.py
count_flagstat_wgs.py		count_flagstat_wgs.py
flowchart.svg		flowchart.svg
input_fastq.py		input_fastq.py
pipeline.py		pipeline.py
pipeline_stages_config.py		pipeline_stages_config.py
run.script		run.script
split_compound_indels.py		split_compound_indels.py
vcftools_prepare.sh		vcftools_prepare.sh

Repository files navigation

rubratargetedpipeline

Based on the VLSCI variant calling pipeline (https://github.com/vlsci/variant_calling_pipeline).

Follow the link or go to the run.script file for information on executing the pipeline.

Khalid

About

No description, website, or topics provided.

0 stars

1 watching

Report repository

Releases

Packages

Contributors

Languages