can't use ubergraph (exception thrown on startup)

[boxxxie]

./clojure/deps.edn

:aliases {
           :clograms {
                      :extra-deps {
                                   ;; code base doc/viewer
                                   ;; https://github.com/jpmonettas/clograms
                                   ;; clj -Sforce -M:clograms -m clograms.server --platform clj clojure-project-folder
                                   com.github.jpmonettas/clograms {:mvn/version "0.1.141"}
                                   }
                      }
}

project deps.edn
ubergraph/ubergraph {:mvn/version "0.8.2"}

command clj -Sforce -M:clograms -m clograms.server --platform clj .

Exception in thread "main" Syntax error compiling at (ubergraph/core.clj:963:44).
        at clojure.lang.Compiler.analyze(Compiler.java:6825)
        at clojure.lang.Compiler.analyze(Compiler.java:6762)
        at clojure.lang.Compiler$InvokeExpr.parse(Compiler.java:3832)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7126)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7112)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyze(Compiler.java:6762)
        at clojure.lang.Compiler$IfExpr$Parser.parse(Compiler.java:2841)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7124)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.access$300(Compiler.java:38)
        at clojure.lang.Compiler$LetExpr$Parser.parse(Compiler.java:6401)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7124)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7112)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7112)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7112)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyze(Compiler.java:6762)
        at clojure.lang.Compiler$BodyExpr$Parser.parse(Compiler.java:6137)
        at clojure.lang.Compiler$LetExpr$Parser.parse(Compiler.java:6453)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7124)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7112)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyze(Compiler.java:6762)
        at clojure.lang.Compiler$BodyExpr$Parser.parse(Compiler.java:6137)
        at clojure.lang.Compiler$LetExpr$Parser.parse(Compiler.java:6453)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7124)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7112)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyze(Compiler.java:6762)
        at clojure.lang.Compiler$BodyExpr$Parser.parse(Compiler.java:6137)
        at clojure.lang.Compiler$FnMethod.parse(Compiler.java:5479)
        at clojure.lang.Compiler$FnExpr.parse(Compiler.java:4041)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7122)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7112)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.access$300(Compiler.java:38)
        at clojure.lang.Compiler$DefExpr$Parser.parse(Compiler.java:596)
        at clojure.lang.Compiler.analyzeSeq(Compiler.java:7124)
        at clojure.lang.Compiler.analyze(Compiler.java:6806)
        at clojure.lang.Compiler.analyze(Compiler.java:6762)
        at clojure.lang.Compiler.eval(Compiler.java:7198)
        at clojure.lang.Compiler.load(Compiler.java:7653)
        at clojure.lang.RT.loadResourceScript(RT.java:381)
        at clojure.lang.RT.loadResourceScript(RT.java:372)
        at clojure.lang.RT.load(RT.java:459)
        at clojure.lang.RT.load(RT.java:424)
        at clojure.core$load$fn__6908.invoke(core.clj:6161)
        at clojure.core$load.invokeStatic(core.clj:6160)
        at clojure.core$load.doInvoke(core.clj:6144)
        at clojure.lang.RestFn.invoke(RestFn.java:408)
        at clojure.core$load_one.invokeStatic(core.clj:5933)
        at clojure.core$load_one.invoke(core.clj:5928)
        at clojure.core$load_lib$fn__6850.invoke(core.clj:5975)
        at clojure.core$load_lib.invokeStatic(core.clj:5974)
        at clojure.core$load_lib.doInvoke(core.clj:5953)
        at clojure.lang.RestFn.applyTo(RestFn.java:142)
        at clojure.core$apply.invokeStatic(core.clj:669)
        at clojure.core$load_libs.invokeStatic(core.clj:6016)
        at clojure.core$load_libs.doInvoke(core.clj:6000)
        at clojure.lang.RestFn.applyTo(RestFn.java:137)
        at clojure.core$apply.invokeStatic(core.clj:669)
        at clojure.core$require.invokeStatic(core.clj:6038)
        at clojure.core$require.doInvoke(core.clj:6038)
        at clojure.lang.RestFn.invoke(RestFn.java:3894)
        at nvestiv.config.core$eval7499$loading__6789__auto____7500.invoke(core.clj:1)
        at nvestiv.config.core$eval7499.invokeStatic(core.clj:1)
        at nvestiv.config.core$eval7499.invoke(core.clj:1)
        at clojure.lang.Compiler.eval(Compiler.java:7194)
        at clojure.lang.Compiler.eval(Compiler.java:7183)
        at clojure.lang.Compiler.load(Compiler.java:7653)
        at clojure.lang.RT.loadResourceScript(RT.java:381)
        at clojure.lang.RT.loadResourceScript(RT.java:372)
        at clojure.lang.RT.load(RT.java:459)
        at clojure.lang.RT.load(RT.java:424)
        at clojure.core$load$fn__6908.invoke(core.clj:6161)
        at clojure.core$load.invokeStatic(core.clj:6160)
        at clojure.core$load.doInvoke(core.clj:6144)
        at clojure.lang.RestFn.invoke(RestFn.java:408)
        at clojure.core$load_one.invokeStatic(core.clj:5933)
        at clojure.core$load_one.invoke(core.clj:5928)
        at clojure.core$load_lib$fn__6850.invoke(core.clj:5975)
        at clojure.core$load_lib.invokeStatic(core.clj:5974)
        at clojure.core$load_lib.doInvoke(core.clj:5953)
        at clojure.lang.RestFn.applyTo(RestFn.java:142)
        at clojure.core$apply.invokeStatic(core.clj:669)
        at clojure.core$load_libs.invokeStatic(core.clj:6016)
        at clojure.core$load_libs.doInvoke(core.clj:6000)
        at clojure.lang.RestFn.applyTo(RestFn.java:137)
        at clojure.core$apply.invokeStatic(core.clj:669)
        at clojure.core$require.invokeStatic(core.clj:6038)
        at clojure.core$require.doInvoke(core.clj:6038)
        at clojure.lang.RestFn.invoke(RestFn.java:3894)
        at user$eval140$loading__6789__auto____141.invoke(user.clj:1)
        at user$eval140.invokeStatic(user.clj:1)
        at user$eval140.invoke(user.clj:1)
        at clojure.lang.Compiler.eval(Compiler.java:7194)
        at clojure.lang.Compiler.eval(Compiler.java:7183)
        at clojure.lang.Compiler.load(Compiler.java:7653)
        at clojure.lang.RT.loadResourceScript(RT.java:381)
        at clojure.lang.RT.loadResourceScript(RT.java:368)
        at clojure.lang.RT.maybeLoadResourceScript(RT.java:364)
        at clojure.lang.RT.doInit(RT.java:486)
        at clojure.lang.RT.init(RT.java:467)
        at clojure.main.main(main.java:38)
Caused by: java.lang.RuntimeException: No such var: d/save!
        at clojure.lang.Util.runtimeException(Util.java:221)
        at clojure.lang.Compiler.resolveIn(Compiler.java:7405)
        at clojure.lang.Compiler.resolve(Compiler.java:7375)
        at clojure.lang.Compiler.analyzeSymbol(Compiler.java:7336)
        at clojure.lang.Compiler.analyze(Compiler.java:6785)
        ... 111 more

i did have code that was actually making a .dot of my clojure dep tree, that file was being pointed at in the initial exceptions. i commented out all the code in that file. still got error.

i then removed ubergraph from my code completely, including deps.

Downloading: ubergraph/ubergraph/0.8.1/ubergraph-0.8.1.pom from clojars
Downloading: ubergraph/ubergraph/0.8.1/ubergraph-0.8.1.jar from clojars

running the program again downloaded a different ubergraph (i'm guessing one of the deps in this codebase is using ubergraph).
the same exception persists.
i missed some ubergraph requires (not using, just ns required uber)
removing all ubergraph refs in my code lead to clograms starting, or getting closer to starting, my tools.namespace deps is now causing problems

this is a bit funny, ubergraph is pretty handy for solving some of my problems. it would be nice to not have to remove it from my code base to use this cool documentation tool

[jpmonettas]

Interesting, I'll take a look. Thanks for reporting it!

[boxxxie]

i'll post another issue after this one is fixed, cus i'm getting exceptions for my use of tools.namespace as well. maybe fixing this will also fix that

[jpmonettas]

Ok, I just got to try this but wasn't able to reproduce the issue, so still not sure.
This is what I tried, created a empty project with a deps.edn like this :

{:paths ["src"]
 :deps {ubergraph/ubergraph {:mvn/version "0.8.2"}}
 :aliases {:clograms {:extra-deps {com.github.jpmonettas/clograms {:mvn/version "0.1.141"}}
                      :main-opts ["-m" "clograms.server" "--platform" "clj" "."]}}}

and then run clj -M:clograms

Didn't see any exceptions.

Do you have the possibility to share your repo or something I could try to reproduce the issue?

[jpmonettas]

Regarding tools.namespace yeah, that is an issue that I'll address soon. The thing is that currently Clograms uses a patched version of tools.namespace, so if you use tools.namespace in your project it should show a message on the console that tells you to remove your version for creating the diagram.This is annoying and I'll revisit it soon, but it is a known issue.

[boxxxie]

I'll investigate further.
maybe tools.namespace is the issue all along. i'll play around with my project a bit on the weekend to see if i can make progress with it using this tool

[jpmonettas]

@boxxxie sure, I'm on Clojurians slack under the same handle if you want to troubleshoot something a little faster.