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Add PanPatch 0.3 to bio compiled software - #184

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kennedydane merged 1 commit into
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dane/panpatch-0.3
Jul 20, 2026
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Add PanPatch 0.3 to bio compiled software#184
kennedydane merged 1 commit into
masterfrom
dane/panpatch-0.3

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Summary

Adds PanPatch v0.3 to the bio compiled software list, alongside the existing 0.2 entry.

Release notes (published 2026-06-29):

  • Telomere patching support (-T)
  • Support scaffolding 2 contigs with 0bp between them
  • New guards for flanking identity, weird self-patches, patch identity
  • Support multiple input graphs at once
  • Stdout changed to a more detailed report

Changes

A single new version entry in roles/compiled/tasks/bio/main.yml. The panpatch.yaml leaf task and the bio/panpatch.lua module template are already version-generic, so nothing else needed changing.

Verification

  • Binary downloaded and confirmed as a statically-linked x86-64 ELF executable; sha512 checksum computed from that download.
  • uv run yamllint . — clean.
  • uv run ansible-lint — passed, 0 failures / 0 warnings, production profile.

Install with:

ansible-playbook site.yaml -t panpatch,panpatch0.3

🤖 Generated with Claude Code

https://claude.ai/code/session_01W3YK4C2YmpXzfFtsZ4JMbG

Registers v0.3 alongside the existing 0.2 entry. The panpatch.yaml leaf
task and Lmod template are already version-generic, so no other changes
are needed.

Checksum verified against the released x86-64 static binary.
Install with: ansible-playbook site.yaml -t panpatch,panpatch0.3

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01W3YK4C2YmpXzfFtsZ4JMbG
Copilot AI review requested due to automatic review settings July 20, 2026 06:24

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Copilot was unable to review this pull request because the user who requested the review has reached their quota limit.

@kennedydane
kennedydane requested a review from MikeCTZA July 20, 2026 06:25
@kennedydane
kennedydane merged commit 8d56431 into master Jul 20, 2026
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@kennedydane
kennedydane deleted the dane/panpatch-0.3 branch July 20, 2026 06:27
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3 participants