The NCSU-BRC: "From ‘Hello Nextflow’ to Your First Pipeline"

A series of hands-on workshops introducing pipeline development and execution with Nextflow.

Course website

https://hurwitzlab.github.io/nextflow_crash_course/

Workshops

Day 0 Workshop Prerequisites (optional, self-paced):

A set of resources to prepare you for the workshop, including:

1. Accessing the Hazel HPC
2. Linux 101
3. BRC Software containers
4. Interactive jobs
5. And more...

Day 1 (half day): Foundations: Thinking in Channels and Processes TBD

Introduction to the Nextflow pipeline building blocks:

1. Hello World: Your First Process
2. Hello Channels: How Data Flows
3. Hello Workflow: Chaining Processes

Day 2 (full day): From Pipeline to Production TBD

Putting your pipeline to work in the SLURM HPC system:

1. Making Your Pipeline Configurable
2. Hello Modules: Organizing for Reuse
3. Hello Containers: Portability
4. Running on SLURM

Provide Feedback!