suite2p_tools
git clone git@github.com:f-hamidlab/pecanpie.git
cd pecanpie
conda create -n pecanpie python=3.8
conda activate pecanpie
pip install .
# or to install pecanpie in editable mode
# pip install -e . This toolbox process outputs of suite2p pipeline for easier visualization and analysis of user-selected set of cells.
For how to install the toolbox, please refer to 00. Installing the toolbox
For a instructions on how to get started with this toolbox, please refer to 01. Getting Started
For a demonstration of the plotting functions, please refer to 02. Plottings
03. Changing selection of ROI describes two ways that you can use to change your set of cells for processing and plotting.
For parameters used in the toolbox and the variables it produces, please refer to 1. Variables
For functions of the toolbox, please refer to 2. Functions