Issues

• How to use the spatial plotting function

  emanuega/MERlin#81 · Filter by author GoogleXie opened on May 7, 2024

• Test_merfish.py takes forever to run

  emanuega/MERlin#80 · Filter by author suestring7 opened on Nov 16, 2023
  2

• When installing MERlin using pip install -e MERlin, there is a error.

  emanuega/MERlin#79 · Filter by author yedeer12 opened on Jun 7, 2023
  1

• Unable to identify image files matching regular expression

  emanuega/MERlin#78 · Filter by author sarnatas opened on May 11, 2023
  5

• Question about RNA Velocity analysis

  emanuega/MERlin#77 · Filter by author mkyriak opened on May 4, 2023

• Tables & h5py dependency error

  emanuega/MERlin#76 · Filter by author Thepuck1999 opened on Nov 11, 2021

• tifffile "ImageJ does not support non-contiguous series"

  emanuega/MERlin#75 · Filter by author r3fang opened on Oct 6, 2021

• Updates needed to installation instructions and requirements.txt

  emanuega/MERlin#70 · Filter by author kernco opened on Dec 28, 2020

• MinimumDistanceDistributionPlot is blank

  emanuega/MERlin#68 · Filter by author kernco opened on Aug 17, 2020

• CleanCellBoundaries error

  emanuega/MERlin#67 · Filter by author kernco opened on Aug 17, 2020
  3

• Are you going to implement cross correlation based global alignment?

  emanuega/MERlin#65 · Filter by author r3fang opened on May 22, 2020
  3

• GPU option?

  emanuega/MERlin#58 · Filter by author HazenBabcock opened on Apr 12, 2020
  6

• Adding run crash notification

  emanuega/MERlin#51 · Filter by author leonardosepulveda opened on Mar 3, 2020
  1

• Update adaptive filter to be capabale of filtering based on in-cell data

  enhancement
  emanuega/MERlin#48 · Filter by author seichhorn opened on Feb 14, 2020
  

• Update spatial feature for shapely compatibility

  bugenhancement
  emanuega/MERlin#46 · Filter by author emanuega opened on Jan 30, 2020

• Segmentation fault in GenerateMosaic with opencv-python 4.1.2.30

  emanuega/MERlin#42 · Filter by author emanuega opened on Jan 23, 2020

• How to run the tests?

  emanuega/MERlin#35 · Filter by author HazenBabcock opened on Dec 7, 2019
  9

• snakemake .tmp files

  enhancement
  emanuega/MERlin#31 · Filter by author seichhorn opened on Dec 2, 2019
  

• True divide runtime warning in analysis\filterbarcodes

  emanuega/MERlin#28 · Filter by author aschrader5 opened on Oct 29, 2019
  16

• Adding in clustering

  enhancement
  emanuega/MERlin#20 · Filter by author seichhorn opened on Oct 1, 2019
  3