Issues

• khmer-protocols/mrnaseq/3-big-assembly.txt trinity installation

  dib-lab/khmer-protocols#163 · Filter by author taylorreiter opened on Mar 3, 2017
  2

• [Acceptance] Installing khmer fails, setuptools doesn't exist, need to backport fix from Master

  dib-lab/khmer-protocols#161 · Filter by author SensibleSalmon opened on Mar 9, 2015
  1

  

• Bring mrnaseq instructions up to date (under mrnaseq/)

  dib-lab/khmer-protocols#151 · Filter by author ctb opened on Feb 26, 2015
  3

• Switch layout of kp site over to simpler single-pane layout?

  dib-lab/khmer-protocols#150 · Filter by author ctb opened on Feb 26, 2015

• Bring amazon instructions up to date

  dib-lab/khmer-protocols#149 · Filter by author ctb opened on Feb 26, 2015

• Missing directory while installing samtools (eelpond)

  dib-lab/khmer-protocols#137 · Filter by author GraceGanzel opened on Nov 14, 2014

• AWS docs specify m1.large/chapter 2 specifies m1.xlarge

  dib-lab/khmer-protocols#135 · Filter by author GraceGanzel opened on Oct 28, 2014

• Normalize by median pct

  dib-lab/khmer-protocols#133 · Filter by author tshori opened on Sep 24, 2014
  2

• Warning during normalize-by-median

  dib-lab/khmer-protocols#131 · Filter by author danbacastro opened on Aug 11, 2014
  5

• acceptance test failure in eel-pond/plot-expression.py

  dib-lab/khmer-protocols#129 · Filter by author mr-c opened on Aug 5, 2014
  5

• Try out CONCOCT on metagenomes

  dib-lab/khmer-protocols#126 · Filter by author ctb opened on Jul 15, 2014

• Add taxator-tk taxonomy to metagenome protocol

  dib-lab/khmer-protocols#125 · Filter by author ctb opened on Jul 15, 2014

• Assemblies crash because of memory issues.

  dib-lab/khmer-protocols#124 · Filter by author SherineAwad opened on Jul 14, 2014

• Develop checklist for protocols release

  dib-lab/khmer-protocols#122 · Filter by author ctb opened on Jul 6, 2014

• Develop checklist for protocols code review

  dib-lab/khmer-protocols#118 · Filter by author ctb opened on Jul 6, 2014
  8

• Remove Run.txt and Readme.txt

  dib-lab/khmer-protocols#109 · Filter by author ctb opened on Jun 8, 2014
  1

  

• a link to khmer-protocols on khmer doc?

  dib-lab/khmer-protocols#97 · Filter by author qingpeng opened on May 16, 2014

• testasm?

  dib-lab/khmer-protocols#94 · Filter by author SherineAwad opened on May 3, 2014
  

• -Q 33 may not be necessary in metagenomics quality trimming

  dib-lab/khmer-protocols#86 · Filter by author qingpeng opened on Apr 22, 2014
  

• "Getting started with Amazon EC2" page lacks discussion about volume

  dib-lab/khmer-protocols#79 · Filter by author qingpeng opened on Apr 14, 2014

• Can we automatically figure out what adapters were used?

  dib-lab/khmer-protocols#76 · Filter by author ctb opened on Mar 29, 2014

• Add directions on tempdir for formatdb

  Wait
  dib-lab/khmer-protocols#75 · Filter by author LSheneman opened on Mar 16, 2014

• Document use of AWS snapshots

  V 0.8.5
  dib-lab/khmer-protocols#73 · Filter by author LSheneman opened on Mar 5, 2014
  1

• Update AWS screenshoots

  V 0.8.5
  dib-lab/khmer-protocols#72 · Filter by author LSheneman opened on Mar 5, 2014

• Fix metadata so latest eel-pond shows up on google

  Wait
  dib-lab/khmer-protocols#71 · Filter by author LSheneman opened on Mar 5, 2014
  2