Hi Tobias,
I used delly 2.0.0 to detect SVs in a WGS sample. It took me nearly 11 hours for the run to complete even though I used --threads to ensure it is multi-threaded.
The command used:
delly call --threads 32 --genome hg38.fa --exclude human.hg38.excl.tsv my_test.bam
When I checked the memory and CPU usage, it looked like it was single-threaded. Is there a way to run delly call multi-threaded for a single WGS sample? Is there a way to reduce the process time?
Thank you in advance :)
Hi Tobias,
I used delly 2.0.0 to detect SVs in a WGS sample. It took me nearly 11 hours for the run to complete even though I used
--threadsto ensure it is multi-threaded.The command used:
delly call --threads 32 --genome hg38.fa --exclude human.hg38.excl.tsv my_test.bamWhen I checked the memory and CPU usage, it looked like it was single-threaded. Is there a way to run delly call multi-threaded for a single WGS sample? Is there a way to reduce the process time?
Thank you in advance :)