All pull requests

Pull requests

• Map general-purpose LLM evidence for epitope identification and ligand design

  #947·delalamo opened Sep 25, 2026Owner·

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• Extend guided conformational sampling to design-time ensembles

  #946·delalamo opened Sep 25, 2026Owner·

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• Generalize the ensemble-feature finding and reconcile TCR specificity limits

  #943·delalamo opened Sep 25, 2026Owner·

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• Document Raygun length-controlled generation and link its existing pLL correction

  #941·delalamo opened Sep 25, 2026Owner·

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• Scope pooled-embedding structural similarity and add the cosine benchmark table

  #940·delalamo opened Sep 25, 2026Owner·

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• Add a structural example to the existing light-chain homodimer note

  #938·delalamo opened Sep 25, 2026Owner·

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• Document method-specific coverage of protein interface clusters

  #937·delalamo opened Sep 25, 2026Owner·

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• Reconcile recurring interface geometry with incomplete interface space

  #936·delalamo opened Sep 25, 2026Owner·

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• Add ADP-3D evidence to the density-fitting note

  #934·delalamo opened Sep 25, 2026Owner·

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• Add the sparse-distance reconstruction finding

  #932·delalamo opened Sep 25, 2026Owner·

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• Add the natalizumab closed-conformation finding

  #931·delalamo opened Sep 25, 2026Owner·

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• Add ABAG-Rank evidence on pooled versus within-target correlation

  #930·delalamo opened Sep 25, 2026Owner·

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• Add the LLM ligand-design constraint finding

  #929·delalamo opened Sep 25, 2026Owner·

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• Generalize asynchronous residue resolution during flow matching

  #928·delalamo opened Sep 25, 2026Owner·

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• Add the ESM3 structure-token tempering finding

  #926·delalamo opened Sep 25, 2026Owner·

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• Add the clinical-antibody off-target binding prevalence finding

  #925·delalamo opened Sep 25, 2026Owner·

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• Generalize the non-interface specificity-engineering finding

  #924·delalamo opened Sep 25, 2026Owner·

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• Add compensatory-mutation evidence for robust starting sequences

  #923·delalamo opened Sep 25, 2026Owner·

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• Add finding on pairwise-distance motif conditioning

  #922·delalamo opened Sep 25, 2026Owner·

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• Add finding on combining co-folding pair representations

  #921·delalamo opened Sep 25, 2026Owner·

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• Add diffusion-free scoring to the confidence-as-energy note

  #920·delalamo opened Sep 25, 2026Owner·

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• Document antibody-complex accuracy versus antigen length

  #919·delalamo opened Sep 25, 2026Owner·

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• Add TorchFold evidence with experimental-data and training confounds

  #918·delalamo opened Sep 25, 2026Owner·

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• Clarify AbMPNN computational gains in TorchCraft

  #917·delalamo opened Sep 25, 2026Owner·

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• Scope PLM novelty limitations and add native-specificity bias

  #915·delalamo opened Sep 25, 2026Owner·

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