A generative model that decomposes single cell gene expression profiles into a set of gene programs, each of which representing a convex combination of tightly coexpressed genes.
The following R packages are required:
Note, RcppEigen also needs gfortran to be installed on the system.
The code was tested using R 4.3.1 running on CentOS Linux 7.
scConvexNMF should be compatible with Windows, Mac, and Linux operating systems.
From an R session, type:
devtools::install_github("csglab/scConvexNMF")
Check the following notebooks for examples on how to run scConvexNMF:
We use GitHub issues for tracking requests and bugs. Please submit a new issue if you have any comment or you would like to report a software bug.