SciPy stack support, nanshe dependencies, some changes from upstream - #10

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jakirkham wants to merge 224 commits into

chaubold:constrackingfrom

jakirkham:fix__OSX_10_9__SciPy_Stack

Commits on Dec 11, 2013

Exclude failing tests on Mac OSX 10.9 using clang compiler.
chaubold
committed
84efa8f
Use qt 4.8.5 from git repository instead of 4.8.3 download, because the old version doesn’t compile on OSX 10.9 with clang.
chaubold
committed
6a5488c
Patch VTK-tiff as a wrong ifdef caused clang to produce duplicate symbol linker errors.
chaubold
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2650401
Set newest OSX deployment target
chaubold
committed
e4a978c
Do not hardcode libxml2 extension to .so in vtk.cmake
chaubold
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1a59912
Do not rely on Qt version tags but use latest head of 4.8 branch
chaubold
committed
cf0b2c4

Commits on Dec 12, 2013

Vigra tests pass, include them again in the build.
chaubold
committed
a79ca74

Commits on Jan 15, 2014

Merge commit '38cd0e98768fd2d3387291dcc637ea403b3d3b19' into fix/OSX10.9
chaubold
committed
34ef6ca

Commits on Jan 16, 2014

Commits on Jan 17, 2014

Commits on Jan 20, 2014

Commits on Jan 21, 2014

Commits on Jan 22, 2014

Commits on Jan 23, 2014

Merge commit '86aeddba8ff5b965d98f9089f2ee5ad918110187' into fix/OSX10.9
chaubold
committed
6237b47

Commits on Feb 20, 2014

Make sure pyqt uses the proper SIP and Python by setting the appropriate PYTHONPATH
chaubold
committed
b72b9a4

Commits on Mar 10, 2014

merge with upstream/master
chaubold
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901b56f
fix cplex shared library building
chaubold
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f36e968
merged
chaubold
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6d57e32

Commits on Apr 9, 2014

Set the pythonpath when building qimage2ndarray
chaubold
committed
056aa21

Commits on Apr 11, 2014

Commits on Apr 13, 2014

sip: Corrected cmake file so that additional flags (-b, -d, -e, -v) are uncommented. They must be uncommented for the build to work. Otherwise, the build will fail to use the correct SIP and may us…
jakirkham
committed
a0ebf37

Commits on Apr 22, 2014

Commits on Apr 23, 2014

Commits on Apr 24, 2014

Commits on May 27, 2014

joblib: Provided a separate cmake for joblib. Tested and it works. This isn't strictly necessary if scikit-learn is installed as it will have joblib under sklearn.externals. However, it doesn't hur…
jakirkham
committed
964434c

Commits on Aug 3, 2014

Commits on Aug 21, 2014

updates openssl package to work on Fedora 20

Stephen Plaza
authored and
jakirkham
committed
a441f6c
pip.cmake: Added pip for installing Python packages.
jakirkham
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b1db86a

Commits on Aug 30, 2014

Commits on Aug 31, 2014

pyzmq.cmake: Requires Cython to build.
jakirkham
committed
cd0a055
spams-python: Created a cmake to install SPAMS with Python bindings. Requires a patch be applied to the setup.py file to ensure that ATLAS is being used to build.
jakirkham
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67e7ff1
Added jsonschema.cmake

stuarteberg
authored and
jakirkham
committed
83e3723
ilastik.cmake: Changed remote url to ilastik/ilastik-meta, not janelia-flyem/ilastik

stuarteberg
authored and
jakirkham
committed
22933fa
ilastik.cmake: Added a new dependency: jsonschema

stuarteberg
authored and
jakirkham
committed
630b156
ilastik.cmake: Require opengm

stuarteberg
authored and
jakirkham
committed
3782754
Added futures.cmake (python futures module backported from Python 3)

stuarteberg
authored and
jakirkham
committed
1c034a9
ilastik.cmake: Updated default ilastik checkout sha

stuarteberg
authored and
jakirkham
committed
adb5748
updates sha for ilastik.cmake

Steve Plaza
authored and
jakirkham
committed
648a6b5
opengm.cmake: Compile with hdf5, boost, and python

stuarteberg
authored and
jakirkham
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9200745
opengm: Build without CPLEX if it can't be found.

stuarteberg
authored and
jakirkham
committed
b8df931
opengm: Added a patch to let us skip the sphinx docs build with a cmake switch.

stuarteberg
authored and
jakirkham
committed
f35f498
openblas.cmake: Added an additional step for installing links. Previously, the links pointed to a non-existent libopenblas.so on Mac. Now, links on Mac point to libopenblas.dylib.
jakirkham
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3807a12
spams-python.cmake: Updated to pass environment variable namely BUILDEM_DIR, GCC, and GXX. The variables GCC and GXX should point to GNU gcc and g++ compilers, respectively.
jakirkham
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2f6fec5
ilastik.cmake: Added scikit-image as dependency.
jakirkham
committed
5c26b77

Commits on Sep 23, 2014

Commits on Oct 11, 2014

Commits on Oct 14, 2014

Update psutil to fix https://github.com/ilastik/ilastik/issues/891

chaubold
authored and
jakirkham
committed
db8de65

Commits on Oct 22, 2014

vigra.cmake: Eliminated extra spaces.
jakirkham
committed
14ac04b

Commits on Nov 21, 2014

Commits on Dec 12, 2014

Commits on Dec 15, 2014

templates/exec.template: Make exec.template an executable. This way, when it is copied to bin, it should be an executable.
jakirkham
committed
f7166fb

Commits on Dec 18, 2014

ilastik.cmake: Update the ilastik version.
jakirkham
committed
123ddbe

Commits on Jan 6, 2015

Commits on Jan 10, 2015

Commits on Jan 14, 2015

Commits on Jan 15, 2015

ann.cmake: Turn off FORCE as it is already in downloads.
jakirkham
committed
9a127a4
dlib.cmake: Turn off FORCE as it is already in downloads.
jakirkham
committed
0a74b0a
libxml2.cmake: Turn off FORCE as it is already in downloads.
jakirkham
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1ec962a
psutil.cmake: Turn off FORCE as it is already in downloads.
jakirkham
committed
19fd88e
matplotlib.cmake: Bump version to 1.4.2.
jakirkham
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307dcfa
ipython.cmake: Bump version from 1.2.1 to 2.1.0.
jakirkham
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b7879f0
opencv.cmake: Correct spacing.
jakirkham
committed
ca333c9
python-markdown.cmake: Markdown parser for Python.
jakirkham
committed
b2f8382
ipython.cmake: Correct spacing.
jakirkham
committed
7a3c6fb
ipython.cmake: Make python-markdown a dependency.
jakirkham
committed
830ffbb

Commits on Jan 20, 2015

pylibtiff.cmake: Added pylibtiff to provide Python bindings to libtiff.
jakirkham
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228eb73

Commits on Jan 23, 2015

cloud_sptheme.cmake: Added cloud theme. A theme for Sphinx.
jakirkham
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7d054be
nanshe.cmake: Add cloud_sptheme as a dependency.
jakirkham
committed
d181e3a

Commits on Feb 20, 2015

vigra.cmake: Supply paths for fftw3f support.
jakirkham
committed
f231447

Commits on Feb 24, 2015

Commits on Feb 26, 2015

Commits on Mar 17, 2015

matplotlib.cmake: Fix missing _NAME.
jakirkham
committed
88b9086
python-geojson.cmake: Added new cmake to build python-geojson.
jakirkham
committed
a9bd428

Commits on Mar 18, 2015

nanshe.cmake: Make PyFFTW a dependency of nanshe.
jakirkham
committed
5985139

Commits on Mar 26, 2015

sphinx.cmake: Add newline to end of file.
jakirkham
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9bd47c8
sphinx.cmake: Update to 1.3.1.
jakirkham
committed
907c15f

Commits on Apr 2, 2015

Commits on Apr 6, 2015

ruffus.cmake: Add support for building ruffus, a Python pipeline builder.
jakirkham
committed
9f4bb8a