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bhavya-24/README.md

Hi, I'm Bhavya 👋

I'm an MSc Bioinformatics student at the University of Edinburgh, currently based at the Roslin Institute, where my dissertation uses long-read assembly and pangenome graphs to map a recessive infertility variant in Whitebred Shorthorn cattle.

Most of my work sits at the point where genomics meets the command line: de novo assembly, structural variant genotyping, single-cell and bulk RNA-seq, and pipelines that other people can rerun without emailing me first. Python, R, and Linux.

📫 bhavyakaushal24@gmail.com · 🌐 bhavya-24.github.io

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  1. PBMCS-Characterization PBMCS-Characterization Public

    This project uses scanpy to analyze single-cell RNA-sequencing (scRNA-seq) data of peripheral blood mononuclear cells (PBMCs). It covers key steps including preprocessing, quality control, normaliz…

    Python

  2. biohack biohack Public

    Forked from briandaniel14/biohack

    Filament Tracker: browser-based platform for detecting and tracking protein filaments in time-lapse microscopy. 1st Prize, Academic Track, PRIMED Edinburgh Bio-hackathon 2026.

    Jupyter Notebook

  3. Sequence_Alignment_Toolkit Sequence_Alignment_Toolkit Public

    Python toolkit for protein sequence alignment: BLAST-style heuristic search and full Smith-Waterman, wrapped in a validated command-line interface with a 32-test automated suite covering scoring, s…

    Python

  4. isl1-allantois-rnaseq isl1-allantois-rnaseq Public

    Reproducible bulk RNA-seq analysis of mouse allantois at E8.25 comparing wild-type and Isl1 mutant embryos (GEO: GSE247182), covering FastQC/STAR quality control, DESeq2 differential expression, an…

    HTML