Issues

• handle different groupreadsbyumi_edits setting in samples

  enhancement
  Feature

  bbglab/deepUMIcaller#212 · Filter by author efigb opened on Oct 22, 2026
  1

• add fgumi MultiQC modules accordingly

  bbglab/deepUMIcaller#207 · Filter by author FerriolCalvet opened on Sep 26, 2026

• add computation of suggested sequencing amount

  bbglab/deepUMIcaller#206 · Filter by author FerriolCalvet opened on Sep 26, 2026

• add Nanoseq BAMs preprocessing

  bbglab/deepUMIcaller#205 · Filter by author FerriolCalvet opened on Sep 26, 2026

• add unit tests

  bbglab/deepUMIcaller#199 · Filter by author FerriolCalvet opened on Jul 30, 2026

• Recover calling of large structural variants

  bbglab/deepUMIcaller#197 · Filter by author FerriolCalvet opened on Jul 28, 2026
  1

• tests: updates and to do

  bbglab/deepUMIcaller#184 · Filter by author m-huertasp opened on Apr 9, 2026

• Suggestion: re-work pipeline to use mimimap2 instead of bwa

  bbglab/deepUMIcaller#182 · Filter by author bkohrn opened on Apr 3, 2026
  1

• Reimplement AS-XS filtering

  bbglab/deepUMIcaller#166 · Filter by author FerriolCalvet opened on Nov 7, 2025 · v1.2.0

• fix memory issues in coverageglobal

  bbglab/deepUMIcaller#151 · Filter by author FerriolCalvet opened on Oct 7, 2025 · v1.2.0
  1

• Force parent_dna to be different from all individual sample names

  bbglab/deepUMIcaller#130 · Filter by author FerriolCalvet opened on Aug 27, 2025

• Create python container for deepUMIcaller

  High
  Task

  bbglab/deepUMIcaller#114 · Filter by author FerriolCalvet opened on Jun 3, 2025 · v1.2.0
  3

• Add step to check for interspecies contamination

  bbglab/deepUMIcaller#111 · Filter by author FerriolCalvet opened on May 24, 2025
  1

  

• Update containers

  bbglab/deepUMIcaller#109 · Filter by author FerriolCalvet opened on May 22, 2025
  1

• Improve mutation QC reporting

  bbglab/deepUMIcaller#103 · Filter by author FerriolCalvet opened on May 15, 2025

• Indel calling

  enhancement
  Feature

  bbglab/deepUMIcaller#91 · Filter by author FerriolCalvet opened on Mar 13, 2025

• Add VAF distorsion filter

  bbglab/deepUMIcaller#74 · Filter by author FerriolCalvet opened on Sep 16, 2024
  1

• Documentation

  documentationenhancement
  bbglab/deepUMIcaller#37 · Filter by author FerriolCalvet opened on Dec 13, 2023 · v1.2.0
  4