topic/fix package

.clang-format

@@ -85,10 +85,6 @@ PenaltyBreakString: 1000
 PenaltyExcessCharacter: 150
 PenaltyReturnTypeOnItsOwnLine: 300
 PointerAlignment: Middle
-RawStringFormats:
-  - Delimiter:       pb
-    Language:        TextProto
-    BasedOnStyle:    google
 ReflowComments:  true
 SortIncludes:    true
 SortUsingDeclarations: true
@@ -107,4 +103,3 @@ Standard:        Cpp11
 TabWidth:        2
 UseTab:          Never
 ...
-

.envrc

@@ -0,0 +1 @@
+use flake .#mesh-sampling

.github/dependabot.yml

@@ -0,0 +1,6 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "monthly"

.github/workflows/build.yml

@@ -10,14 +10,13 @@ on:
 
 jobs:
   clang-format:
-    runs-on: ubuntu-18.04
+    runs-on: ubuntu-22.04
     steps:
-    - uses: actions/checkout@v1
-    - name: Install clang-format-6.0
+    - uses: actions/checkout@v4
+    - name: Install clang-format
       run: |
         sudo apt-get -qq update
-        sudo apt-get -qq remove clang-6.0 libclang1-6.0 libclang-common-6.0-dev libllvm6.0
-        sudo apt-get -qq install clang-format-6.0 clang-format
+        sudo apt-get -qq install clang-format-14
     - name: Run clang-format-check
       run: |
         ./.clang-format-check.sh
@@ -27,39 +26,43 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-16.04, ubuntu-18.04]
-        build-type: [RelWithDebInfo, Release]
+        os: [ubuntu-22.04, ubuntu-24.04]
+        build-type: [Debug, RelWithDebInfo]
         compiler: [gcc, clang]
 
     runs-on: ${{ matrix.os }}
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v4
       with:
         submodules: recursive
-    - name: Install cmake
-      run: |
-        wget -O - https://apt.kitware.com/keys/kitware-archive-latest.asc 2>/dev/null | sudo apt-key add -
-        sudo apt-add-repository -y 'deb https://apt.kitware.com/ubuntu/ bionic main'
-        sudo apt-get -qq update
-        sudo apt-get -qq install cmake
-        cmake --version
     - name: Install dependencies
       uses: jrl-umi3218/github-actions/install-dependencies@master
       with:
         compiler: ${{ matrix.compiler }}
         build-type: ${{ matrix.build-type }}
         ubuntu: |
-          apt: libeigen3-dev libpcl-dev libproj-dev libassimp-dev libboost-test-dev doxygen doxygen-latex
+          apt: libeigen3-dev libqhull-dev libproj-dev libassimp-dev libgtest-dev doxygen doxygen-latex
     - name: Build and test
       uses: jrl-umi3218/github-actions/build-cmake-project@master
       with:
         compiler: ${{ matrix.compiler }}
         build-type: ${{ matrix.build-type }}
     # Checks that finding the library and building against it works
-    - name: Test consumption
-      uses:  arntanguy/github-actions/build-cmake-project@topic/skip-install
-      with:
-        compiler: ${{ matrix.compiler }} 
-        build-type: Release 
-        project-dir: tests/test_mesh_sampling
-        skip-install: "true"
+    - name: Check usage
+      shell: bash
+      run: |
+        set -x
+        export LD_LIBRARY_PATH="/usr/lib/x86_64-linux-gnu:${LD_LIBRARY_PATH}"
+        export CMAKE_PREFIX_PATH="/usr/lib/x86_64-linux-gnu/cmake:${CMAKE_PREFIX_PATH}"
+
+        ./.github/workflows/scripts/test-usage.sh ${{ matrix.build-type }}
+  check:
+    if: always()
+    name: check-build-ubuntu
+    runs-on: ubuntu-latest
+    needs:
+      - build
+    steps:
+      - uses: re-actors/alls-green@release/v1
+        with:
+          jobs: ${{ toJSON(needs) }}

.github/workflows/nix.yml

@@ -0,0 +1,39 @@
+name: "CI - Nix"
+on:
+  push:
+    branches:
+      - devel
+      - master
+      - main
+  pull_request:
+    branches:
+      - devel
+      - master
+      - main
+jobs:
+  nix:
+    runs-on: "${{ matrix.os }}-latest"
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu]
+    steps:
+      - uses: actions/checkout@v6
+      - uses: cachix/install-nix-action@v31
+      - uses: cachix/cachix-action@v17
+        with:
+          name: mc-rtc-nix
+          authToken: '${{ secrets.CACHIX_AUTH_TOKEN }}'
+          extraPullNames: "ros,gepetto"
+      - run: nix flake check -L
+      - run: nix build -L
+  check:
+    if: always()
+    name: check-macos-linux-nix
+    runs-on: ubuntu-latest
+    needs:
+      - nix
+    steps:
+      - uses: re-actors/alls-green@release/v1
+        with:
+          jobs: ${{ toJSON(needs) }}

.github/workflows/package.yml

@@ -1,77 +1,38 @@
 name: Package mesh_sampling
-
-# This workflow only runs when pushing to master or pushing a tag
-#
-# On master, it will:
-# - Build packages for selected Debian/Ubuntu distro
-# - Upload the packages to https://dl.bintray.com/arntanguy/ppa-head
-
 on:
+  repository_dispatch:
+    types:
+    - package-master
+    - package-release
   push:
-    paths-ignore:
-      - ".github/workflows/build.yml"
     branches:
-      - "**"
-
+    - "**"
+    tags:
+    - v*
+  pull_request:
+    branches:
+    - "**"
 jobs:
-  # This job build binary packages for Ubuntu
-  build-packages:
-    strategy:
-      fail-fast: false
-      matrix:
-        dist: [xenial, bionic, focal]
-        arch: [amd64]
-    runs-on: ubuntu-18.04
-    steps:
-    - uses: actions/checkout@v1
-    - name: Prepare recipe
-      run: |
-        set -x
-        cp .github/workflows/mesh_sampling.recipe /tmp/mesh_sampling.recipe
-        export REF=`echo ${{ github.ref }} | sed -e 's@refs/[a-z]*/@@'`
-        sed -i "s#@REF@#${REF}#" /tmp/mesh_sampling.recipe
-        echo "Prepared recipe"
-        echo "###############"
-        cat /tmp/mesh_sampling.recipe
-    - name: Build package
-      uses: arntanguy/github-actions/build-package@topic/cmake3.11
-      with:
-        dist: ${{ matrix.dist }}
-        arch: ${{ matrix.arch }}
-        recipe: /tmp/mesh_sampling.recipe
-    - uses: actions/upload-artifact@v1
-      with:
-        name: packages-${{ matrix.dist }}-${{ matrix.arch }}
-        path: /tmp/packages-${{ matrix.dist }}-${{ matrix.arch }}/
-  # This job upload binary packages for Ubuntu
-  upload-packages:
-    needs: build-packages
-    strategy:
-      max-parallel: 1
-      fail-fast: false
-      matrix:
-        dist: [bionic,focal]
-        arch: [amd64]
-    runs-on: ubuntu-18.04
-    if: github.ref == 'refs/heads/master' && github.repository == 'arntanguy/mesh_sampling'
+  package:
+    uses: jrl-umi3218/github-actions/.github/workflows/package-project.yml@master
+    with:
+      latest-cmake: true
+      update-stable-and-head: true
+      matrix: |
+          {
+            "dist": ["jammy", "noble", "resolute"],
+            "arch": ["amd64"]
+          }
+    secrets:
+      CLOUDSMITH_API_KEY: ${{ secrets.CLOUDSMITH_API_KEY }}
+      GH_TOKEN: ${{ secrets.GH_PAGES_TOKEN }}
+  check:
+    if: always()
+    name: check-package-ubuntu
+    runs-on: ubuntu-latest
+    needs:
+      - package
     steps:
-    - name: Download packages
-      uses: actions/download-artifact@v1
-      with:
-        name: packages-${{ matrix.dist }}-${{ matrix.arch }}
-    - name: Upload
-      uses: jrl-umi3218/github-actions/upload-package@master
-      with:
-        dist: ${{ matrix.dist }}
-        arch: ${{ matrix.arch }}
-        subject: arntanguy
-        repo: ppa-head
-        package: |
-          name: mesh-sampling
-          desc: "mesh-sampling Convert CAD models to PCL pointcloud"
-          licenses: [BSD 2-Clause]
-          vcs_url: https://github.com/arntanguy/mesh_sampling
-        version: 1.0.0
-        path: packages-${{ matrix.dist }}-${{ matrix.arch }}
-        BINTRAY_API_KEY: ${{ secrets.BINTRAY_API_KEY }}
-        GPG_PASSPHRASE: ${{ secrets.GPG_PASSPHRASE }}
+      - uses: re-actors/alls-green@release/v1
+        with:
+          jobs: ${{ toJSON(needs) }}

.github/workflows/scripts/test-usage.sh

@@ -0,0 +1,12 @@
+#!/bin/bash
+
+readonly CMAKE_BUILD_TYPE=$1
+readonly this_dir=`cd $(dirname $0); pwd`
+readonly root_dir=`cd $this_dir/../../../; pwd`
+readonly project_dir=$root_dir/tests/test_mesh_sampling
+
+mkdir -p $project_dir/build
+
+cd $project_dir/build
+cmake ../ -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE} || exit 1
+cmake --build . --config ${CMAKE_BUILD_TYPE} || exit 1

.github/workflows/update-flake-lock.yml

@@ -0,0 +1,32 @@
+name: update-flake-lock
+on:
+  workflow_dispatch:
+  schedule:
+    # runs at 2:00 AM on the 25th day of every month
+    - cron: '0 2 25 * *'
+jobs:
+  update-flake-inputs:
+    runs-on: ubuntu-slim
+    permissions:
+      contents: write
+      pull-requests: write
+    steps:
+      - name: Generate GitHub App Token
+        id: app-token
+        uses: actions/create-github-app-token@v3
+        with:
+          app-id: ${{ secrets.MC_RTC_NIX_APP_ID }}
+          private-key: ${{ secrets.MC_RTC_NIX_APP_PRIVATE_KEY }}
+      - name: Checkout repository
+        uses: actions/checkout@v6
+        with:
+          token: ${{ steps.app-token.outputs.token }}
+      - name: Setup Nix
+        uses: cachix/install-nix-action@v31
+      - name: Update flake inputs
+        uses: mic92/update-flake-inputs@v1
+        with:
+          github-token: ${{ steps.app-token.outputs.token }}
+          pr-labels: 'no-changelog'
+          git-author-name: 'arntanguy[bot]'
+          git-author-email: '67139+arntanguy@users.noreply.github.com'

.gitignore

@@ -1,3 +1,7 @@
 compile_commands.json
 *.pyc
 build/
+.cache/
+.vscode/
+.direnv/
+result

.gitmodules

@@ -1,3 +0,0 @@
-[submodule "cmake"]
-	path = cmake
-	url = git://github.com/jrl-umi3218/jrl-cmakemodules.git

.mergify.yml

@@ -0,0 +1,27 @@
+pull_request_rules:
+  # automatically queues when a bot pr succeeds (see queue_rules)
+  - name: merge [bot] PRs when CI pass
+    conditions:
+      - or:
+        - author = dependabot[bot]
+        - author = gepetto-flake-updater[bot]
+        - author = mc-rtc-nixpkgs-flake-updater[bot]
+        - author = github-actions[bot]
+        - author = pre-commit-ci[bot]
+    actions:
+      queue:
+
+  # runs when commenting @mergifyio queue
+  - name: queue PRs with "queue" label when all CI checks pass
+    conditions:
+      - label = queued
+    actions:
+      queue:
+
+# ensure that required CI jobs suceed
+queue_rules:
+  - name: default
+    merge_conditions:
+      - check-success = "check-macos-linux-nix"
+      - check-success = "check-build-ubuntu"
+      - check-success = "check-package-ubuntu"

.pre-commit-config.yaml

@@ -0,0 +1,30 @@
+ci:
+  autoupdate_schedule: quarterly
+exclude: '^ext/'
+repos:
+- repo: meta
+  hooks:
+  - id: check-useless-excludes
+  - id: check-hooks-apply
+- repo: https://github.com/pre-commit/mirrors-clang-format
+  rev: v19.1.7
+  hooks:
+  - id: clang-format
+    types_or: [c++, c]
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v5.0.0
+  hooks:
+  - id: check-added-large-files
+  - id: check-executables-have-shebangs
+  - id: check-merge-conflict
+  - id: destroyed-symlinks
+  - id: detect-private-key
+  - id: end-of-file-fixer
+  - id: fix-byte-order-marker
+  - id: mixed-line-ending
+  - id: trailing-whitespace
+
+- repo: https://github.com/cheshirekow/cmake-format-precommit
+  rev: v0.6.13
+  hooks:
+  - id: cmake-format