[DO NOT MERGE] eval #31601 i:1: Textual definition update: protein carrier activity and unfolded protein holdase activity (opencode/openai/gpt-5.4, .) - #664
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…tivity) Per sjm41 comments on issue #31963: - Reaction simplified to use 'phytyl diphosphate' and 'geranylgeranyl diphosphate' (matching EC:1.3.1.83 / RHEA:26229 wording) - NADP corrected to NADP+ - Added sentence noting that this enzyme also catalyzes the reduction of geranylgeranyl-chlorophyll a into phytyl-chlorophyll a (PMID:9492312) - Definition references updated to EC:1.3.1.83, PMID:9492312, RHEA:26229 Obsoletion of GO:0045550 to be handled in a separate ticket. Refs geneontology/go-ontology#31963 --- 🤖 Generated by @dragon-ai-agent - Model: claude-opus-4-7 - Agent harness: claude-code - Triggered by: @raymond91125 - Run: https://github.com/geneontology/go-ontology/actions/runs/25065339565 Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…63-run7919 Update GO:0102067 definition per sjm41 comments (refs #31963)
Model: openai/gpt-5.4 Issue repo: geneontology/go-ontology Agent config: ai4curation/go-ontology-agent-config@v9:. Iteration: 1 Artifacts: https://github.com/ai4curation/eval-ont-agent-go/actions/runs/25978277382#artifacts
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Original Issue
#31601: Textual definition update: protein carrier activity and unfolded protein holdase activity
Original PR (human solution)
#32007: Revise GO:0140597 (protein carrier activity) definition per #31601
Agent Commits
Note: This PR diff shows ONLY the agent's changes. The baseline is eval_base_branch.
Agent Response - PR Comments
This PR updates the textual definition for
GO:0140597(protein carrier activity) in response to issue #31601.Change made:
Binding to and carrying a protein to an acceptor molecule or to a specific location by moving along with the target protein.Directly binding to a protein and delivering it either to an acceptor molecule or to a specific location.Rationale:
Checks completed:
GO:0140597and relatedGO:0140309obo-checkout.pl/obo-checkin.plworkflow viaterms/robot verifySPARQL QC suite successfully after the editFiles changed:
src/ontology/go-edit.oboLocal commit:
378528aRevise protein carrier activity definition🤖 Generated by opencode agent
opencodeopenai/gpt-5.4ai4curation/go-ontology-agent-config@v9:.1Agent Response - Issue Comments
Updated
GO:0140597(protein carrier activity) to the broader wording requested in the thread.The definition now reads: "Directly binding to a protein and delivering it either to an acceptor molecule or to a specific location."
The change has been committed locally and can be included in PR #.
🤖 Generated by opencode agent
opencodeopenai/gpt-5.4ai4curation/go-ontology-agent-config@v9:.1Experiment Config
openai/gpt-5.4ai4curation/go-ontology-agent-config@v9:.1https://href.li/?eval-base-issue-31601See workflow artifacts for full agent trace.